View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3211_low_42 (Length: 219)

Name: NF3211_low_42
Description: NF3211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3211_low_42
NF3211_low_42
[»] chr7 (2 HSPs)
chr7 (19-200)||(1909250-1909433)
chr7 (63-126)||(8299923-8299986)
[»] chr4 (2 HSPs)
chr4 (31-125)||(5450314-5450408)
chr4 (19-102)||(4607956-4608039)
[»] chr3 (1 HSPs)
chr3 (49-126)||(21821866-21821944)
[»] chr2 (2 HSPs)
chr2 (19-126)||(14292640-14292748)
chr2 (22-118)||(20489044-20489140)
[»] scaffold0032 (1 HSPs)
scaffold0032 (21-118)||(25169-25264)
[»] chr5 (1 HSPs)
chr5 (39-111)||(15375995-15376067)


Alignment Details
Target: chr7 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 19 - 200
Target Start/End: Complemental strand, 1909433 - 1909250
Alignment:
Q  19 gaactcacatcagacaatattgataacattttgatcaagttatgcattcatccaagcatactattttgaaaatattcaagcatagatcactgaggtcttt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1909433 gaactcacatcagacaatattgataacattttgatcaagttatgcattcatccaagcatactattttgaaaatattcaagcatagatcactgaggtcttt 1909334  T
Q  119 taagggtttgtattgttgctaggctacc--nnnnnnntgtcatatataggcaattgaaacaaagtggccttagtccagagcatt 200  Q
    ||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||    
T  1909333 taagggtttgtattgttgctaggctaccaaaaaaaaatgtcatatataggcaattgaaacaaagtggccttagtccagagcatt 1909250  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 126
Target Start/End: Original strand, 8299923 - 8299986
Alignment:
Q  63 cattcatccaagcatactattttgaaaatattcaagcatagatcactgaggtcttttaagggtt 126  Q
    |||||||||||||||| |||||||||||| |||||||  |||||||| ||| |||| |||||||    
T  8299923 cattcatccaagcatattattttgaaaatgttcaagctaagatcactaaggcctttaaagggtt 8299986  T

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Target: chr4 (Bit Score: 55; Significance: 9e-23; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 31 - 125
Target Start/End: Complemental strand, 5450408 - 5450314
Alignment:
Q  31 gacaatattgataacattttgatcaagttatgcattcatccaagcatactattttgaaaatattcaagcatagatcactgaggtcttttaagggt 125  Q
    |||||||||| |||||| |||||||| |||||||||||||||||||||| ||||  |||||||||||||||| |||||| || | ||||||||||    
T  5450408 gacaatattgctaacatcttgatcaaattatgcattcatccaagcataccatttcaaaaatattcaagcatatatcactaagatattttaagggt 5450314  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 4608039 - 4607956
Alignment:
Q  19 gaactcacatcagacaatattgataacattttgatcaagttatgcattcatccaagcatactattttgaaaatattcaagcata 102  Q
    |||||||||||| ||||| ||||||| || || |||||||||||||||||||||| ||||||| |||||||||||| |||||||    
T  4608039 gaactcacatcaaacaatcttgataatatcttcatcaagttatgcattcatccaaacatactactttgaaaatattaaagcata 4607956  T

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Target: chr3 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 49 - 126
Target Start/End: Complemental strand, 21821944 - 21821866
Alignment:
Q  49 ttgatcaagttatgcattcatccaagcatactattttg-aaaatattcaagcatagatcactgaggtcttttaagggtt 126  Q
    ||||| ||||||||||||||||||||||||| |||||| |||||||| |||||||||||||  |||||||| |||||||    
T  21821944 ttgattaagttatgcattcatccaagcatacaattttgaaaaatattaaagcatagatcaccaaggtctttgaagggtt 21821866  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 126
Target Start/End: Original strand, 14292640 - 14292748
Alignment:
Q  19 gaactcacatcagacaatattgataacattttgat--caagttatgcattcatccaagcatactattttgaaaatattcaagcatagatcactgaggtct 116  Q
    ||||||||||  |||||| ||| |||||| |||||  |||||||||||||||||||||| || || || |||| |||| |||||| ||||| | |||| |    
T  14292640 gaactcacatatgacaatcttgctaacatcttgatatcaagttatgcattcatccaagcttattacttcgaaagtatttaagcatggatcaataaggt-t 14292738  T
Q  117 tttaagggtt 126  Q
    ||||||||||    
T  14292739 tttaagggtt 14292748  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 118
Target Start/End: Original strand, 20489044 - 20489140
Alignment:
Q  22 ctcacatcagacaatattgataacattttgatcaagttatgcattcatccaagcatactattttgaaaatattcaagcatagatcactgaggtcttt 118  Q
    ||||||||  ||||| ||| ||| || ||||||||||| || | ||||||||||||| || || ||||||||| ||| |||||||| | ||||||||    
T  20489044 ctcacatcgaacaatcttgctaatatcttgatcaagttttgaaatcatccaagcatattacttagaaaatattaaagtatagatcattaaggtcttt 20489140  T

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Target: scaffold0032 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 21 - 118
Target Start/End: Complemental strand, 25264 - 25169
Alignment:
Q  21 actcacatcagacaatattgataacattttgatcaagttatgcattcatccaagcatactattttgaaaatattcaagcatagatcactgaggtcttt 118  Q
    ||||||||| |||||| | | ||||||  ||||||||||| |||| |||||||||||| |  |||||||  || ||||||||||||||| ||||||||    
T  25264 actcacatccgacaatgt-gctaacatcctgatcaagttaggcatacatccaagcatattcatttgaaagcat-caagcatagatcactaaggtcttt 25169  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 111
Target Start/End: Complemental strand, 15376067 - 15375995
Alignment:
Q  39 tgataacattttgatcaagttatgcattcatccaagcatactattttgaaaatattcaagcatagatcactga 111  Q
    |||||||||  ||||||||||| ||||||||| |||||||  | ||||||| |||| ||  ||||||||||||    
T  15376067 tgataacatcctgatcaagttaggcattcatctaagcatatcaatttgaaagtattaaaatatagatcactga 15375995  T

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