View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3211_low_44 (Length: 211)
Name: NF3211_low_44
Description: NF3211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3211_low_44 |
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Alignment Details
Target: chr7 (Bit Score: 177; Significance: 1e-95; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 12 - 196
Target Start/End: Original strand, 30909423 - 30909607
Alignment:
| Q |
12 |
agcataggcataaccacaattaaccacttcgtcaatatggccagcagcagagtagttggtcttttctcaatagtcttgatttgcattacaatagcacaag |
111 |
Q |
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| T |
30909423 |
agcataagcataaccacaattaaccacttcgtcaatatggccagcagcagagtagttggtcttttctcaatagtcttgatttgcattacaatagcacaag |
30909522 |
T |
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| Q |
112 |
gaagaaaagcacttaacactaataatgaattttcagcatcgtctctagttaacaacgatgatggcatctgcaaaagtatggtaga |
196 |
Q |
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| T |
30909523 |
gaagaaaagcacttaacactaacaatgaattttcagcatcgtctctagttaacaacgatgatggcatctgcaaaagtatggtaga |
30909607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 20 - 162
Target Start/End: Original strand, 30902969 - 30903111
Alignment:
| Q |
20 |
cataaccacaattaaccacttcgtcaatatggccagcagcagagtagttggtcttttctcaatagtcttgatttgcattacaatagcacaaggaagaaaa |
119 |
Q |
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| T |
30902969 |
cataagcaaaattaaccacattgtcaacatggccagcacaatactagttagtctaatctcaatagtcttgttttgcattacagtagcacaaggaagaaaa |
30903068 |
T |
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| Q |
120 |
gcacttaacactaataatgaattttcagcatcgtctctagtta |
162 |
Q |
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| T |
30903069 |
acacttcacacaaccaatgaaatttcagcatcctctctagtta |
30903111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 19 - 196
Target Start/End: Original strand, 11297823 - 11298000
Alignment:
| Q |
19 |
gcataaccacaattaaccacttcgtcaatatggccagcagcagagtagttggtcttttctcaatagtcttgatttgcattacaatagcacaaggaagaaa |
118 |
Q |
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| T |
11297823 |
gcataagcataattaactacattgtcaatatggccagcagcaaagtagttaatcttttatcaattgtcttgctttgcattacaatagtacaaggaagaaa |
11297922 |
T |
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| Q |
119 |
agcacttaacactaataatgaattttcagcatcgtctctagttaacaacgatgatggcatctgcaaaagtatggtaga |
196 |
Q |
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| T |
11297923 |
aacacttaacactagcattgaattttcaccatcgtctctagttaacaatgatgatggtgtctgcaagagtatgataga |
11298000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 19 - 196
Target Start/End: Original strand, 11292470 - 11292647
Alignment:
| Q |
19 |
gcataaccacaattaaccacttcgtcaatatggccagcagcagagtagttggtcttttctcaatagtcttgatttgcattacaatagcacaaggaagaaa |
118 |
Q |
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| T |
11292470 |
gcataaacataattaaccacattgtcaatatggccaggaggaaagtagttaatcttttctcaattgtcatgctttgcattacaatagtacaaggaagaaa |
11292569 |
T |
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| Q |
119 |
agcacttaacactaataatgaattttcagcatcgtctctagttaacaacgatgatggcatctgcaaaagtatggtaga |
196 |
Q |
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| T |
11292570 |
aaccataaacactagtaatgaattttcagcatcgtctctagataacaatgacgatggtatctgcaagagtatggtaga |
11292647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 196
Target Start/End: Complemental strand, 36714074 - 36713945
Alignment:
| Q |
70 |
gtcttttctcaatagtcttgatttgcattacaatagcacaaggaagaaaagcacttaacactaataatgaattttcagcatcgtctctagtt---aacaa |
166 |
Q |
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| T |
36714074 |
gtcttatctcaatagtcttgttttacattgcagcagcccaaggaagaaaaacacttcacacaaacaatgaattttttgcatcctctccagttaccaataa |
36713975 |
T |
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| Q |
167 |
cgatgatggcatctgcaaaagtatggtaga |
196 |
Q |
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| T |
36713974 |
ctatgatggtatctgcaaaactatagtaga |
36713945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 32 - 130
Target Start/End: Complemental strand, 36706462 - 36706364
Alignment:
| Q |
32 |
taaccacttcgtcaatatggccagcagcagagtagttggtcttttctcaatagtcttgatttgcattacaatagcacaaggaagaaaagcacttaacac |
130 |
Q |
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| T |
36706462 |
taaccactttgtcaaaatggctagcagagtattaattagtcttatctcattagtcttgctttgcattacaacaacacaaggaagaaaaacactttacac |
36706364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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