View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3211_low_6 (Length: 523)
Name: NF3211_low_6
Description: NF3211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3211_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 156 - 508
Target Start/End: Complemental strand, 37942039 - 37941699
Alignment:
| Q |
156 |
gcttcttttcagcttgcaacaaattttcacaccatgaatgatcaaacacgcaacaacacgaataacaacatcaacatgcaggttggaaatcaaaacccaa |
255 |
Q |
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| T |
37942039 |
gcttcttttcagcttgcaacaaattttcacaccatgaatgatcaaacacgcaacaaca------------tcaacatgcaggttggaaatcaaaacccaa |
37941952 |
T |
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| Q |
256 |
agaaacgttcaagagcatcaaggcgtgcacctacagctgttctaacaacagacactacaaatttcagagccatggttcaaaaattcactggtatcccaga |
355 |
Q |
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| T |
37941951 |
agaaacgttcaagagcatcaaggcgtgcacctacaactgttctaacaacagacactacaaatttcagagccatggttcaaaaattcactggtatcccaga |
37941852 |
T |
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| Q |
356 |
actaccacctttcatcacatcttctcatcatttcccaaaaacaaggttggatctctttacttctgcttcaacaataacattccctccttataatcttctt |
455 |
Q |
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| T |
37941851 |
actaccacctttcatcacatcttctcatcatttcccaaaaacaaggttggatctctttacttctgcttcaacaataacattccctccttataatcttctt |
37941752 |
T |
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| Q |
456 |
cgtcccgttgcacacaatcttcttcctccatcctcttccattcacaaccaatt |
508 |
Q |
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| T |
37941751 |
cgtcccgttgcacacaatcttcttcctccatcctcttccattcacaaccaatt |
37941699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 11 - 129
Target Start/End: Complemental strand, 37942172 - 37942054
Alignment:
| Q |
11 |
cacagaccttgatactatctggtccaaaccagttagatccgaaccaaacaaagccgatcttaacaacttgttacctatttcttcatcgtcttcactacta |
110 |
Q |
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| T |
37942172 |
cacagaccttgatactatctggtccaaaccagttagatccgaaccaaacaaaaccgatcttaacaacttgttacctatttcttcatcgtcttcactacta |
37942073 |
T |
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| Q |
111 |
cagaaccaaatcatgaatc |
129 |
Q |
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| T |
37942072 |
cagaaccaaatcatgaatc |
37942054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 255 - 354
Target Start/End: Complemental strand, 39637085 - 39636986
Alignment:
| Q |
255 |
aagaaacgttcaagagcatcaaggcgtgcacctacagctgttctaacaacagacactacaaatttcagagccatggttcaaaaattcactggtatcccag |
354 |
Q |
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|||||| | |||||||| ||||| ||||||||||| | ||||| || ||||| |||||||||||||||||||||||||| |||| |||||||| |||| |
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| T |
39637085 |
aagaaaagatcaagagcttcaagacgtgcacctactacagttctcactacagatactacaaatttcagagccatggttcaggaatttactggtataccag |
39636986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 267 - 352
Target Start/End: Complemental strand, 26257812 - 26257727
Alignment:
| Q |
267 |
agagcatcaaggcgtgcacctacagctgttctaacaacagacactacaaatttcagagccatggttcaaaaattcactggtatccc |
352 |
Q |
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||||||||||| | |||||||| | ||||||||||| |||||| | ||||| ||||||||||||||| ||||||| |||||||| |
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| T |
26257812 |
agagcatcaagaagagcacctacgacagttctaacaaccgacacttcgaattttagagccatggttcaagaattcaccggtatccc |
26257727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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