View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3211_low_8 (Length: 439)

Name: NF3211_low_8
Description: NF3211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3211_low_8
NF3211_low_8
[»] chr6 (27 HSPs)
chr6 (18-434)||(26848226-26848642)
chr6 (18-119)||(26949542-26949643)
chr6 (18-123)||(27214294-27214399)
chr6 (18-191)||(27234829-27234996)
chr6 (25-119)||(26959046-26959140)
chr6 (24-119)||(25071540-25071635)
chr6 (25-119)||(26635571-26635665)
chr6 (25-119)||(26741537-26741631)
chr6 (25-119)||(26974933-26975027)
chr6 (24-119)||(27665328-27665423)
chr6 (18-152)||(26811357-26811491)
chr6 (369-420)||(26811169-26811220)
chr6 (370-420)||(26861117-26861167)
chr6 (369-420)||(26974611-26974662)
chr6 (369-420)||(27310311-27310362)
chr6 (372-419)||(26635248-26635295)
chr6 (372-419)||(26741214-26741261)
chr6 (381-420)||(27317676-27317715)
chr6 (381-420)||(27581275-27581314)
chr6 (369-423)||(26616963-26617017)
chr6 (369-423)||(26722891-26722945)
chr6 (371-420)||(26958799-26958848)
chr6 (371-420)||(27667862-27667911)
chr6 (146-191)||(27214232-27214277)
chr6 (18-66)||(26617260-26617308)
chr6 (18-66)||(26723188-26723236)
chr6 (251-324)||(26974704-26974779)
[»] chr2 (2 HSPs)
chr2 (247-420)||(17994141-17994307)
chr2 (18-108)||(17993889-17993979)


Alignment Details
Target: chr6 (Bit Score: 377; Significance: 0; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 18 - 434
Target Start/End: Complemental strand, 26848642 - 26848226
Alignment:
Q  18 aggttcggattccattgtcagaaagagctttatagagattaccagtgaaactgaatctagtgtcggtgcccctgaaactaatgaacacatcatagttgaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26848642 aggttcggattccattgtcagaaagagctttatagagattaccagtgaaactgaatctagtgtcggtgcccctgaaactaatgaacacatcatagttgaa 26848543  T
Q  118 attattggaggaagaggaagacaaagaggaagaagaagaaggtgattgcacagccatgagaagaaatgatagtgttgtgttattctcggatctgttnnnn 217  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  26848542 attattgcaggaagaggaagacaaagaggaagaagaagaaggtgattgcacagccatgagaagaaatgatagtgttgtgttattctcggatctgttaaaa 26848443  T
Q  218 nnnnctgggaaggtagattatcagtgttgtgcatttaacattagtcacgaaacctccttctcatttttctctagccgtgtggaccagtcacaattattgt 317  Q
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||    
T  26848442 aaaactgggaaggtagattatcagtgttgtgcatttaacattagtcacgaaacctccttctcattttcctctagccgtgtggaccagtcataattattgt 26848343  T
Q  318 accaccttgttttttctcccactataactttttgctaaaacaatcaaattaatcaattattgctcaactttttctttagtgaaaatcattgcagaaccat 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26848342 accaccttgttttttctcccactataactttttgctaaaacaatcaaattaatcaattattgctcaactttttctttagtgaaaatcattgcagaaccat 26848243  T
Q  418 tatcttcctttgttact 434  Q
    |||||| ||||||||||    
T  26848242 tatctttctttgttact 26848226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 26949643 - 26949542
Alignment:
Q  18 aggttcggattccattgtcagaaagagctttatagagattaccagtgaaactgaatctagtgtcggtgcccctgaaactaatgaacacatcatagttgaa 117  Q
    ||||||||||||| |||||||| |||||||||||||||||||| ||||||| ||||| ||||||||| || ||||||||||||||||||||| |||||||    
T  26949643 aggttcggattcccttgtcagagagagctttatagagattaccggtgaaaccgaatcgagtgtcggtacctctgaaactaatgaacacatcaaagttgaa 26949544  T
Q  118 at 119  Q
    ||    
T  26949543 at 26949542  T

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Target: chr6; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 18 - 123
Target Start/End: Complemental strand, 27214399 - 27214294
Alignment:
Q  18 aggttcggattccattgtcagaaagagctttatagagattaccagtgaaactgaatctagtgtcggtgcccctgaaactaatgaacacatcatagttgaa 117  Q
    ||||||||||||| |||||| |||||||||||||||||||||| ||||||| |  || ||||||||| |||||||||||||||||||| |||||| ||||    
T  27214399 aggttcggattcctttgtcacaaagagctttatagagattaccggtgaaaccgtgtcgagtgtcggtacccctgaaactaatgaacacgtcatagctgaa 27214300  T
Q  118 attatt 123  Q
    ||||||    
T  27214299 attatt 27214294  T

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Target: chr6; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 18 - 191
Target Start/End: Original strand, 27234829 - 27234996
Alignment:
Q  18 aggttcggattccattgtcagaaagagctttatagagattaccagtgaaactgaatctagtgtcggtgcccctgaaactaatgaacacatcatagttgaa 117  Q
    ||||||||||||| |||||| |||||||||||||||||||||| ||||||| |  || ||||||||| |||||||||||||||||||| |||||| ||||    
T  27234829 aggttcggattcctttgtcacaaagagctttatagagattaccggtgaaaccgtgtcgagtgtcggtacccctgaaactaatgaacacgtcatagctgaa 27234928  T
Q  118 attattggaggaagaggaagacaaagaggaagaagaagaaggtgattgcacagccatgagaagaaatgatagtg 191  Q
    |||||| |||    |||  |   | || |||| ||||||||||| ||||| |||||||||| ||||||||||||    
T  27234929 attattagag----aggccgg--aggaagaagtagaagaaggtggttgcatagccatgagaggaaatgatagtg 27234996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 25 - 119
Target Start/End: Complemental strand, 26959140 - 26959046
Alignment:
Q  25 gattccattgtcagaaagagctttatagagattaccagtgaaactgaatctagtgtcggtgcccctgaaactaatgaacacatcatagttgaaat 119  Q
    |||||| ||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||| || || ||| ||||||    
T  26959140 gattcctttgtcagaaagagctttatagaggttaccggtgaaactgaatcgagtgtcggtgcccctgaaactaatgaagacgtcgtaggtgaaat 26959046  T

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Target: chr6; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 24 - 119
Target Start/End: Complemental strand, 25071635 - 25071540
Alignment:
Q  24 ggattccattgtcagaaagagctttatagagattaccagtgaaactgaatctagtgtcggtgcccctgaaactaatgaacacatcatagttgaaat 119  Q
    ||||||| |||||||||||||||||||| |||||||| || |||| ||||| ||||||||| |||||||||||||||||||| |||||| ||||||    
T  25071635 ggattcctttgtcagaaagagctttataaagattaccggtaaaaccgaatcgagtgtcggtacccctgaaactaatgaacacgtcatagatgaaat 25071540  T

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Target: chr6; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 25 - 119
Target Start/End: Complemental strand, 26635665 - 26635571
Alignment:
Q  25 gattccattgtcagaaagagctttatagagattaccagtgaaactgaatctagtgtcggtgcccctgaaactaatgaacacatcatagttgaaat 119  Q
    |||||| ||||||||||||||||||||||| ||||| ||||||| ||||  |||||||||||||||||||||||||||||| || ||| ||||||    
T  26635665 gattcctttgtcagaaagagctttatagaggttaccggtgaaaccgaattgagtgtcggtgcccctgaaactaatgaacacgtcgtaggtgaaat 26635571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 25 - 119
Target Start/End: Complemental strand, 26741631 - 26741537
Alignment:
Q  25 gattccattgtcagaaagagctttatagagattaccagtgaaactgaatctagtgtcggtgcccctgaaactaatgaacacatcatagttgaaat 119  Q
    |||||| ||||||||||||||||||||||| ||||| ||||||| ||||  |||||||||||||||||||||||||||||| || ||| ||||||    
T  26741631 gattcctttgtcagaaagagctttatagaggttaccggtgaaaccgaattgagtgtcggtgcccctgaaactaatgaacacgtcgtaggtgaaat 26741537  T

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Target: chr6; HSP #9
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 25 - 119
Target Start/End: Complemental strand, 26975027 - 26974933
Alignment:
Q  25 gattccattgtcagaaagagctttatagagattaccagtgaaactgaatctagtgtcggtgcccctgaaactaatgaacacatcatagttgaaat 119  Q
    |||||| ||||||||||||||||||||||| ||||| ||||||| ||||| ||||||||| || ||||||||||||||||| |||||| ||||||    
T  26975027 gattcctttgtcagaaagagctttatagaggttaccggtgaaaccgaatcgagtgtcggtacctctgaaactaatgaacacgtcataggtgaaat 26974933  T

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Target: chr6; HSP #10
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 24 - 119
Target Start/End: Original strand, 27665328 - 27665423
Alignment:
Q  24 ggattccattgtcagaaagagctttatagagattaccagtgaaactgaatctagtgtcggtgcccctgaaactaatgaacacatcatagttgaaat 119  Q
    ||||||| |||||||||||||| |||||||| ||||| |||||||  |||| ||||||||| |||||||||||||||||||||||  |||||||||    
T  27665328 ggattcctttgtcagaaagagccttatagaggttaccggtgaaaccaaatcgagtgtcggtacccctgaaactaatgaacacatcgaagttgaaat 27665423  T

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Target: chr6; HSP #11
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 26811491 - 26811357
Alignment:
Q  18 aggttcggattccattgtcagaaagagctttatagagattaccagtgaaactgaatctagtgtcggtgcccctgaaactaatgaacacatcatagttgaa 117  Q
    ||||||||||||| |||||| |||||||||||||||||| ||| ||||| |   ||| ||||||| | |||||||||||||||||||| |||||| ||||    
T  26811491 aggttcggattcctttgtcacaaagagctttatagagatgaccggtgaagccagatcgagtgtcgatacccctgaaactaatgaacacgtcatagatgaa 26811392  T
Q  118 attattggaggaagaggaagacaaagaggaagaag 152  Q
    || ||| |||   ||||| ||| | ||||||||||    
T  26811391 atcattagagagggaggaggacgaggaggaagaag 26811357  T

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Target: chr6; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 369 - 420
Target Start/End: Complemental strand, 26811220 - 26811169
Alignment:
Q  369 atcaattattgctcaactttttctttagtgaaaatcattgcagaaccattat 420  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  26811220 atcaattattgttcaactttttctttagtgaaaatcattgcagaaccattat 26811169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 370 - 420
Target Start/End: Complemental strand, 26861167 - 26861117
Alignment:
Q  370 tcaattattgctcaactttttctttagtgaaaatcattgcagaaccattat 420  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  26861167 tcaattattgatcaactttttctttaatgaaaatcattgcagaaccattat 26861117  T

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Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 369 - 420
Target Start/End: Complemental strand, 26974662 - 26974611
Alignment:
Q  369 atcaattattgctcaactttttctttagtgaaaatcattgcagaaccattat 420  Q
    ||||||||||| |||||||||||||| |||||| ||||||||||||||||||    
T  26974662 atcaattattgttcaactttttcttttgtgaaactcattgcagaaccattat 26974611  T

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Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 369 - 420
Target Start/End: Original strand, 27310311 - 27310362
Alignment:
Q  369 atcaattattgctcaactttttctttagtgaaaatcattgcagaaccattat 420  Q
    ||||||||| | |||||||||||||||||||||||||||| |||||||||||    
T  27310311 atcaattatcgttcaactttttctttagtgaaaatcattgaagaaccattat 27310362  T

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Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 372 - 419
Target Start/End: Complemental strand, 26635295 - 26635248
Alignment:
Q  372 aattattgctcaactttttctttagtgaaaatcattgcagaaccatta 419  Q
    |||||||| |||||||||||||| |||||| |||||||||||||||||    
T  26635295 aattattgttcaactttttcttttgtgaaactcattgcagaaccatta 26635248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 372 - 419
Target Start/End: Complemental strand, 26741261 - 26741214
Alignment:
Q  372 aattattgctcaactttttctttagtgaaaatcattgcagaaccatta 419  Q
    |||||||| |||||||||||||| |||||| |||||||||||||||||    
T  26741261 aattattgttcaactttttcttttgtgaaactcattgcagaaccatta 26741214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 381 - 420
Target Start/End: Original strand, 27317676 - 27317715
Alignment:
Q  381 tcaactttttctttagtgaaaatcattgcagaaccattat 420  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  27317676 tcaactttttctttagtgaaaatcattgaagaaccattat 27317715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 381 - 420
Target Start/End: Original strand, 27581275 - 27581314
Alignment:
Q  381 tcaactttttctttagtgaaaatcattgcagaaccattat 420  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  27581275 tcaactttttctttagtgaaaatcattgaagaaccattat 27581314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 369 - 423
Target Start/End: Complemental strand, 26617017 - 26616963
Alignment:
Q  369 atcaattattgctcaactttttctttagtgaaaatcattgcagaaccattatctt 423  Q
    ||||||||||| ||||||||| || | |||||||||| |||||||||||||||||    
T  26617017 atcaattattgttcaacttttactgtggtgaaaatcactgcagaaccattatctt 26616963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 369 - 423
Target Start/End: Complemental strand, 26722945 - 26722891
Alignment:
Q  369 atcaattattgctcaactttttctttagtgaaaatcattgcagaaccattatctt 423  Q
    ||||||||||| ||||||||| || | |||||||||| |||||||||||||||||    
T  26722945 atcaattattgttcaacttttactgtggtgaaaatcactgcagaaccattatctt 26722891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 371 - 420
Target Start/End: Complemental strand, 26958848 - 26958799
Alignment:
Q  371 caattattgctcaactttttctttagtgaaaatcattgcagaaccattat 420  Q
    ||||||||| |||||||||||||| |||||| ||||| ||||||||||||    
T  26958848 caattattgttcaactttttcttttgtgaaactcattacagaaccattat 26958799  T

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Target: chr6; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 371 - 420
Target Start/End: Original strand, 27667862 - 27667911
Alignment:
Q  371 caattattgctcaactttttctttagtgaaaatcattgcagaaccattat 420  Q
    ||||||||| ||||||||||||||| |||||| || ||||||||||||||    
T  27667862 caattattgttcaactttttctttactgaaaaacactgcagaaccattat 27667911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 191
Target Start/End: Complemental strand, 27214277 - 27214232
Alignment:
Q  146 gaagaagaagaaggtgattgcacagccatgagaagaaatgatagtg 191  Q
    |||| ||||||||||| ||||| |||||||||| ||||||||||||    
T  27214277 gaagtagaagaaggtggttgcatagccatgagaggaaatgatagtg 27214232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 26617308 - 26617260
Alignment:
Q  18 aggttcggattccattgtcagaaagagctttatagagattaccagtgaa 66  Q
    ||||||||| ||| |||||| ||||||||||||||||||| || |||||    
T  26617308 aggttcggactcctttgtcacaaagagctttatagagattgccggtgaa 26617260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 26723236 - 26723188
Alignment:
Q  18 aggttcggattccattgtcagaaagagctttatagagattaccagtgaa 66  Q
    ||||||||| ||| |||||| ||||||||||||||||||| || |||||    
T  26723236 aggttcggactcctttgtcacaaagagctttatagagattgccggtgaa 26723188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 324
Target Start/End: Complemental strand, 26974779 - 26974704
Alignment:
Q  251 tttaacattagtcacgaaacctccttctcatttttctctagccgtgtggaccagt--cacaattattgtaccacct 324  Q
    ||||||||||||  |||||| |||||| |||||| ||  | ||||||||||||||  |||||||||| ||||||||    
T  26974779 tttaacattagtagcgaaacttccttcacattttactacatccgtgtggaccagtcacacaattattttaccacct 26974704  T

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Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 247 - 420
Target Start/End: Original strand, 17994141 - 17994307
Alignment:
Q  247 tgcatttaacattagtcacgaaacctccttctcatttttctctagccgtgtggaccagtcaca--attattgtaccaccttgttttttctcccactataa 344  Q
    |||||||||||| |||  |||||| ||||||||||| | || |||||||||||||||||||||  ||||||| || ||||  ||||| |||||||  | |    
T  17994141 tgcatttaacatcagtggcgaaacttccttctcattctcctatagccgtgtggaccagtcacacaattattgcactacctcatttttcctcccacagtca 17994240  T
Q  345 ctttttgctaaaacaatcaaattaatcaattattgctcaactttttctttagtgaaaatcattgcagaaccattat 420  Q
    ||||||||||||          | ||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  17994241 ctttttgctaaag---------tcatcaattattgttcaactttttctttactgaaaatcattgcagaaccattat 17994307  T

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Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 17993889 - 17993979
Alignment:
Q  18 aggttcggattccattgtcagaaagagctttatagagattaccagtgaaactgaatctagtgtcggtgcccctgaaactaatgaacacatc 108  Q
    ||||||| ||||| ||||||||||||||||||||||||||||| |||||||   ||| ||| ||||| |||||||||||||||||||||||    
T  17993889 aggttcgaattcccttgtcagaaagagctttatagagattaccggtgaaaccatatcgagtatcggtacccctgaaactaatgaacacatc 17993979  T

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