View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3211_low_9 (Length: 415)
Name: NF3211_low_9
Description: NF3211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3211_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-125; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 23748263 - 23747934
Alignment:
| Q |
1 |
caggaattgaagcaataaccagttgttgtcctcagctaaaaacattttccgtctactggaacgtgaggtactttgaaaaatttcttaatgtgccatgttt |
100 |
Q |
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| T |
23748263 |
caggaattgaagcaataactagttgttgtcctcagctaaaaacattttccgtctactggaacgtgaggtactttgaaaa--ttcttaatgacccgtgttt |
23748166 |
T |
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| Q |
101 |
gatttagcatttgaaaatcttactttggatttacaagtcaatccttagtaacaatactgaaatatgactcttatttcagggtaactgatactggactact |
200 |
Q |
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| T |
23748165 |
gatttagcatttgaaaatctcactttggatttaaaagtcaatccttagcaacaatactgaa-tatgactcttatttcagggtaactgatactggactact |
23748067 |
T |
|
| Q |
201 |
acatacagtgaggaactgtaaacacattgttgatttgaatataagtggttgtaaggtacacgatgccctgtagttgtgattttgtacacttacgttatta |
300 |
Q |
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| T |
23748066 |
acatacagcgaggaactgcaaacacattgttgatttgaatataagtggttgtaaggtacacgatgcc--gtagttgtgattttgtacgcttaggtta--- |
23747972 |
T |
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| Q |
301 |
ttgttattattatacgtatcgtacattgtgtgtatatttag |
341 |
Q |
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|||| |||| || |||| |||||||||||||||||||| |
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| T |
23747971 |
---ttatcattacacatatcatacattgtgtgtatatttag |
23747934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 4 - 218
Target Start/End: Complemental strand, 23687333 - 23687119
Alignment:
| Q |
4 |
gaattgaagcaataaccagttgttgtcctcagctaaaaacattttccgtctactggaacgtgaggtactttgaaaaatttcttaatgtgccatgtttgat |
103 |
Q |
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| T |
23687333 |
gaattgaagcaataaccagttgttgtcctcagctagaaacctgttccatctactggaatgtgaggtgcattcaattttttctaaatgtgcaatgtttgat |
23687234 |
T |
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| Q |
104 |
ttagcatttgaaaatcttactttggatttacaagtcaatccttagtaacaatactgaaatatgactcttatttcagggtaactgatactggactactaca |
203 |
Q |
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| T |
23687233 |
tttgcagttgaaaacctcactttggatttaaaagttaatccttagcaacaatactgaaatatgagtcctattacaggataactgataatcgactacttca |
23687134 |
T |
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| Q |
204 |
tacagtgaggaactg |
218 |
Q |
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| T |
23687133 |
tacagtgaggaactg |
23687119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 6 - 61
Target Start/End: Original strand, 23743232 - 23743287
Alignment:
| Q |
6 |
attgaagcaataaccagttgttgtcctcagctaaaaacattttccgtctactggaa |
61 |
Q |
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|||||||||||||||||||||||| |||||||| |||| |||||| |||||||||| |
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| T |
23743232 |
attgaagcaataaccagttgttgttctcagctataaaccttttccatctactggaa |
23743287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 23721392 - 23721338
Alignment:
| Q |
4 |
gaattgaagcaataaccagttgttgtcctcagcta-aaaacattttccgtctact |
57 |
Q |
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|||||||||||||||||| |||||||||||||||| ||||| |||||| |||||| |
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| T |
23721392 |
gaattgaagcaataaccaattgttgtcctcagctagaaaactttttccatctact |
23721338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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