View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3212-Insertion-2 (Length: 760)
Name: NF3212-Insertion-2
Description: NF3212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3212-Insertion-2 |
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Alignment Details
Target: chr7 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 8 - 440
Target Start/End: Original strand, 6704026 - 6704461
Alignment:
| Q |
8 |
gtatgtaaaagtaaagtacacataaatcaccaaccaatgcaaatacaacaatatagtttgatatgtacttt-aaatcattaactttcgactaaaacatgc |
106 |
Q |
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| T |
6704026 |
gtatgtaaaagtaaagtacacataaatcaccaaccaatgtaaatacaacaatatagtttgatatgtacttttaaatcattaactttcgactaaaacatgc |
6704125 |
T |
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| Q |
107 |
acatatatatgtatgcttagacatagtataaaggagtgtattgaattgtgtattgtttttgtgctgaggtgtttcaagaattgatgaaaggaagaacatc |
206 |
Q |
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| T |
6704126 |
acatatatatgtatgcttagacatagtataaaagagtgtatcgaattgtgtaatgtttgtgtgctgagatgtttcaagaattgatgaaaggaagaacatc |
6704225 |
T |
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| Q |
207 |
tcctatcatgtaatttggttagaaatcaatgaca--nnnnnnnagaggaagatggcaaatatgaaagaggtggtagatatttttaaaagaaaatatagat |
304 |
Q |
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| T |
6704226 |
tcctatcatgtaatttggttagaaatcaatgacatttttttttagaggaagatggcgaatatgaaagaggtggtagatatttttaaaagaaaatatagat |
6704325 |
T |
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| Q |
305 |
aatgataaaagaatatcatggtcccatgttgaatgttgcgaacttaaatatgtatttatagatagacgcatttctcacatttataaattagttttaaaat |
404 |
Q |
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| T |
6704326 |
aatgataaaagaatatcatggtcccatgttgaatgttgcgaacttaaatatgtatttatagatagacgcattcctcacatttacaaattagttttaaaat |
6704425 |
T |
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| Q |
405 |
ggttcagttaggttcaactcaaaacaatgcattatg |
440 |
Q |
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| T |
6704426 |
ggttgagttaggttcaactcaaagtaatgcattatg |
6704461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 493 - 760
Target Start/End: Original strand, 6704515 - 6704782
Alignment:
| Q |
493 |
ccctatgagaagaaatttattatatctctttaacttataagtttttgtttttgaatagttacactacacctaacttgataatacatgaattccacttcca |
592 |
Q |
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| T |
6704515 |
ccctatgagaagaaatttattatatctctttaacttataagtttttgtttttgtatagttacactacacctaacttgataatacatgaattccacttcca |
6704614 |
T |
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| Q |
593 |
ccaaacttaatacacaaacctaatgccctatgtagtagaagtcacataattatatatatgcgttgagttcaatagacaaacaccttaactctattcacaa |
692 |
Q |
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| T |
6704615 |
ccaaacttaatacacaaacctaatgccctatgtagtagaagtcacataattatatatatgcgttgagttcaatagacaaacaccttaactctattcacaa |
6704714 |
T |
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| Q |
693 |
tttacatgagtttgaaactcaagtaaaacagaaatggaagacaacttcctagaaatgtacttcttacc |
760 |
Q |
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| T |
6704715 |
tttacatgagtttcaaactcaaataaaacagaaatggaagacaacttccaagaaatgtacttcttacc |
6704782 |
T |
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