View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3212-Insertion-3 (Length: 677)
Name: NF3212-Insertion-3
Description: NF3212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3212-Insertion-3 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 606; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 606; E-Value: 0
Query Start/End: Original strand, 8 - 677
Target Start/End: Original strand, 56176878 - 56177544
Alignment:
| Q |
8 |
gatgttagcatgtctgaggttcattcttgtgctcttccagttcctgtaattttcttctctgtaaattattggttccattttctannnnnnnngggtacaa |
107 |
Q |
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| T |
56176878 |
gatgttagcatgtctgaggttcattcttgtgctcttccagttcctgtaatttccttctctgtaaattattggttccattttctatttttttcgggtacaa |
56176977 |
T |
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| Q |
108 |
tttcaccaatatctgtgtttggttattatattataatctttttaaactgaaataggtcagcttctttatggatctattcagtggaggtgagttggactgt |
207 |
Q |
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| T |
56176978 |
tttcaccaatatctgtgtttggttattatattataattttttttaactgaaataggtcagcttctttatggatctattcagtggaggtgagttggactgt |
56177077 |
T |
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| Q |
208 |
agggtcatggaaaaatctggctgtgttagttattcttataccccttgggtatctgagaagaagggtgtctatgaaagggctatatattacaaatctgaga |
307 |
Q |
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| T |
56177078 |
agggtcatggaaaaatctggctgtgttagttattcttataccccttgggtatctgagaagaagggtgtctatgaaagggctatatattacaaatctgaga |
56177177 |
T |
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| Q |
308 |
agcgtatttcacgttataaagttgaagtaacaagtactcaacaaaaaactattttggatggaaatggttggcttgtagaagaggttatgaacttccatgg |
407 |
Q |
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| T |
56177178 |
agcgtatttcacgttataaagttgaagtaacaagtactcaacaaaaaactattttggatggaaatggttggcttgtagaagaggttatgaacttccatgg |
56177277 |
T |
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| Q |
408 |
agttcctcttggtgattattttaatgtgagtaagtcaatttatcaagttccttgtctttctcttttcctttttaacaaatctaacttatttgttatatat |
507 |
Q |
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| T |
56177278 |
agttcctcttggtgattattttaatgtgagtaagtcaatttatcaagttccttgtctttctcttttcctttttaacaaatctaacttattt-ttatatat |
56177376 |
T |
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| Q |
508 |
ctttgtttctagaacttacctgttattgccaccttgttctttgatttccgcctaacgtattattgactagtattttttgaattccacagttgcaccttcg |
607 |
Q |
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| T |
56177377 |
ctttgtttctagaacttacttgttattgccaccttgttctttgattt-cgcctaacgtattattgactagta-tttttgaattccacagttgcaccttcg |
56177474 |
T |
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| Q |
608 |
ctatcaaattgatgatttacccccaaaagcaaagggatgcaaagttcaagtattatttggaattgaatgg |
677 |
Q |
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| T |
56177475 |
ctatcaaattgatgatttacccccaaaagcaaagggatgcaaagttcaagtattatttggaattgaatgg |
56177544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 209 - 438
Target Start/End: Original strand, 9999395 - 9999627
Alignment:
| Q |
209 |
gggtcatggaaaaatctggctgtgttagttattcttataccccttgggtatctgagaagaagggtgtctatgaaagggctatatattacaaatctgagaa |
308 |
Q |
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| T |
9999395 |
gggtcatggaaaattctggttgtctgaattactcttataccccatgggtatcagagaacagtgatatctctgagagggcagtatattacaaatttgagaa |
9999494 |
T |
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| Q |
309 |
gcgtatttcacgttataaagttgaagtaacaagtactcaacaaaaaact---attttggatggaaatggttggcttgtagaagaggttatgaacttccat |
405 |
Q |
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| T |
9999495 |
gcacatttcgagttataaaggtgaagtgacaagtactcagcaaagatctccccttttggatggaaagggttgggttgttgaagaggttttaaatcttcat |
9999594 |
T |
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| Q |
406 |
ggagttcctcttggtgattattttaatgtgagt |
438 |
Q |
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| T |
9999595 |
ggtgttcctcttggtgattatttcaatgtgagt |
9999627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 591 - 677
Target Start/End: Original strand, 9999710 - 9999796
Alignment:
| Q |
591 |
ccacagttgcaccttcgctatcaaattgatgatttacccccaaaagcaaagggatgcaaagttcaagtattatttggaattgaatgg |
677 |
Q |
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|||||| | ||| |||||||||| || || ||||||||||||||||||||||| || | ||| |||||||| |||||| |||||||| |
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| T |
9999710 |
ccacagatacacattcgctatcatatagaggatttacccccaaaagcaaaggggtgtagagtgcaagtattctttggagttgaatgg |
9999796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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