View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3212-Insertion-4 (Length: 476)
Name: NF3212-Insertion-4
Description: NF3212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3212-Insertion-4 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 101 - 476
Target Start/End: Original strand, 2955927 - 2956302
Alignment:
| Q |
101 |
attcctcaaatacattttcttctattagtgaatatattgggttcatatgaatgataatgtattgttgattccgttttgagacaatccatgcttgtgctca |
200 |
Q |
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| T |
2955927 |
attcctcaaatacattttcttctactagtgaatatattgggttcatatgaatgataatgtattgttgattccgttttgagacaatccatgcttgtgctca |
2956026 |
T |
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| Q |
201 |
tcatccaaatgatttggctttaaagcattgataagatgatttggctgttaactgattatgttatttgttgtccttggtacaaaagcttctatcttgatga |
300 |
Q |
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| T |
2956027 |
tcatccaaatgatttggctttaaagcattgataagatgatttggctgttaactgattatgttatttgttgtccttggtacaaaagcttctatctagatga |
2956126 |
T |
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| Q |
301 |
aatggtttaaacattaatcaatgtgcttcaatttctttgattggatgaaatagcttatcgttccatccgggttcccattacaagtggttgtggaacatac |
400 |
Q |
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| T |
2956127 |
aacggtttaaacattaatcaatgtgcttcaatttctttgattggatgaaatagcttatcgttccatccgggttcccattacaagtggttgtggaacatac |
2956226 |
T |
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| Q |
401 |
tatctgttggaaccgatagtatgctagggagttgtatttgggtgcctttgagtgcggttcttggtttgtttcttcg |
476 |
Q |
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| T |
2956227 |
tatctgttggaaccgatagtatgctagggagttgtatttgggtgcctttgagtgcggttcttggtttgtttcttcg |
2956302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 8 - 103
Target Start/End: Original strand, 2955741 - 2955836
Alignment:
| Q |
8 |
ccaatggtatgaattccttgtataattaagaccgtcaagataatgtcgtgcataacctgctctattttgcaggagttttcgcgcatagcatgtatt |
103 |
Q |
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| T |
2955741 |
ccaatggtatgaattccttgtataattaagaccgtcgagataatgtcgtgcataacctgctctattttgcaggagttttcgcgcataacatgtatt |
2955836 |
T |
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