View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3212-Insertion-5 (Length: 334)
Name: NF3212-Insertion-5
Description: NF3212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3212-Insertion-5 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 7 - 334
Target Start/End: Complemental strand, 29041000 - 29040660
Alignment:
| Q |
7 |
agaagggatgttgagagtgttggaagctttggatgatagctcaaaaccagttgaagatgattgtgagcctccacctccagttagtgtagctggccatatt |
106 |
Q |
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| T |
29041000 |
agaagggatgttgagagtgttggaagctttggatgatagctcaaaaccggttgaagatgattgtgagcctccacctccagttagtgtagctggccatatt |
29040901 |
T |
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| Q |
107 |
gtaaatggacaattgtttgtgattgtgaatgttgctgagtgagaccc--tacatacataaaaatttgttagttattcaaaatataaattactttaagaga |
204 |
Q |
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| T |
29040900 |
gtaaatggacaattgtttgtgattgtgaatgttgctgagtgagaccctatacatacataaaaatttgttagttattcaaaatataaattactttaagagc |
29040801 |
T |
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| Q |
205 |
taa-----------taatgaagaagatatgcaagaaattagagcttaattacctgagagaaaaaatgttgataaggaaagcatgaaaagtataccaactt |
293 |
Q |
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| T |
29040800 |
taagaacacataattaatgaagaagatatgcaagaaattagagcttaattacctgagagaaaaagtgttgataaggaaagcatgaaaagtataccaactt |
29040701 |
T |
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| Q |
294 |
ccatttgtgaattattttgattttattttctgcttggttga |
334 |
Q |
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| T |
29040700 |
ccatttgtgaattattttgattttattttctgcttggttga |
29040660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 28 - 146
Target Start/End: Original strand, 28745508 - 28745626
Alignment:
| Q |
28 |
ggaagctttggatgatagctcaaaaccagttgaagatgattgtgagcctccacctccagttagtgtagctggccatattgtaaatggacaattgtttgtg |
127 |
Q |
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| T |
28745508 |
ggaagttttggagggtagctcaaaacctgttgaagtttattgtgaacttccacctttagtgagtgtagctggccatatggtgaatggacaattgtttgtg |
28745607 |
T |
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| Q |
128 |
attgtgaatgttgctgagt |
146 |
Q |
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| T |
28745608 |
attgtgaatgttgcagagt |
28745626 |
T |
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