View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3212-Insertion-6 (Length: 296)
Name: NF3212-Insertion-6
Description: NF3212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3212-Insertion-6 |
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Alignment Details
Target: chr5 (Bit Score: 124; Significance: 8e-64; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 7 - 142
Target Start/End: Complemental strand, 41367810 - 41367675
Alignment:
| Q |
7 |
aaatttatatcaagttggcaatagaacaaaaaccatttctcttcttagttcttgcttgtaaccaagctcattgattctcttctctgcttaatccacagca |
106 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
41367810 |
aaatttatatcaaggtggcaatagaacaaaaaccatttctcttcttagttcttgcttgtaaccaagctcattgattctcttctctgcttaatccatagca |
41367711 |
T |
|
| Q |
107 |
gtgttttctgtcatttccacaaaattttgcttaaat |
142 |
Q |
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| T |
41367710 |
gtgttttctgtcatttccacaaaattttgctcaaat |
41367675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 176 - 284
Target Start/End: Complemental strand, 41367681 - 41367569
Alignment:
| Q |
176 |
ctcaaattaaagttgttcctgatcatgtgcgattcctttccttaattttcattccaacaacattcaataaagcttt----ttacatcgattattaccaac |
271 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
41367681 |
ctcaaattaaagttgttgctgatcatgtgcgattcctttccttaattttcattccaacaacattcaataaagctttttaattacatcgattattaccaac |
41367582 |
T |
|
| Q |
272 |
aacaaacattatt |
284 |
Q |
| |
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||||||||||||| |
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| T |
41367581 |
aacaaacattatt |
41367569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 9e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 15 - 119
Target Start/End: Complemental strand, 44281623 - 44281519
Alignment:
| Q |
15 |
atcaagttggcaatagaacaaaaaccatttctcttcttagttcttgcttgtaaccaagctcattgattctcttctctgcttaatccacagcagtgttttc |
114 |
Q |
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|||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||| ||||||| |
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| T |
44281623 |
atcaagatggcaaaagaacaaaaaccatttctcttcttagttcttgcttgtaaccaagctcattgagtctcttctctgctgaatccatagctatgttttc |
44281524 |
T |
|
| Q |
115 |
tgtca |
119 |
Q |
| |
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||||| |
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|
| T |
44281523 |
tgtca |
44281519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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