View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3212R-Insertion-1 (Length: 965)
Name: NF3212R-Insertion-1
Description: NF3212R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3212R-Insertion-1 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 908; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 908; E-Value: 0
Query Start/End: Original strand, 9 - 965
Target Start/End: Complemental strand, 43986103 - 43985144
Alignment:
| Q |
9 |
cttaaagcaggaaacaaaacatgccctaaaacaggggagaatattaaaaacacagagttagtcccaaacacaacgctgaagagacttatccaacaatttt |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43986103 |
cttaaagcaggaaacaaaacatgccctaaaacaggggagaatattaaaaacacagagttagtcccaaacacaacgctgaagagacttatccaacaatttt |
43986004 |
T |
|
| Q |
109 |
gcagtgataatggtatttcattcacaagattttctaaccgtaaccgtgacataacgaggacgattttacccggtagttctgcagcagcacatgctacgca |
208 |
Q |
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| T |
43986003 |
gcagtgataatggtatttcattcacaagattttctaaccgtaaccgtgacataacgaggacgattttacccggtagttctgcagcagcacatgctacgca |
43985904 |
T |
|
| Q |
209 |
gtttctgtcatggtttctaacacgaaggctcgtgttcggaacagagcaacagaagaataaagcagcttacgagattcgtttgttaacaaggtcaagcatt |
308 |
Q |
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| T |
43985903 |
gtttctgtcatggtttctaacacgaaggctcgtgttcggaacagagcaacagaagaataaagcagcttacgagattcgtttgttaacaaggtcaagcatt |
43985804 |
T |
|
| Q |
309 |
ttcaacagagcttgtttgattgaagttggaactgtgccaccactgttggatcttttagctacggaggataaaaccactcaggagaatgcaatctctgctt |
408 |
Q |
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| T |
43985803 |
ttcaacagagcttgtttgattgaagttggaactgtgccaccactgttggatcttttagctacggaggataaaaccactcaggagaatgcaatctctgctt |
43985704 |
T |
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| Q |
409 |
tactgaagctttcaaagtatgcaaccgggcctgaaaatataatagaccataacggtttaaatcccgttgtgtatgtactgaaaaatggacttagtcttga |
508 |
Q |
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| T |
43985703 |
tactgaagctttcaaagtatgcaaccgggcctgaaaatataatagaccataacggtttaaagcccgttgtgtatgtactgaaaaatggacttagtcttga |
43985604 |
T |
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| Q |
509 |
agcccgtcaaattgcagctgctataatattctatctttgttcagtgaaagaatatagaaaattaataggtgaaaatcaagatgtgattcatggtttagtt |
608 |
Q |
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| T |
43985603 |
agcccgtcaaattgcagcagctataatattctatctttgttcagtgaaagaatatagaaaattaataggtgaaaatcaagatgtgattcatggtttagtt |
43985504 |
T |
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| Q |
609 |
gaattggctaaagaaggaacaacctgcgggaaaaagaatgcagtggttgccatttttggacttcttttgcttcctaggaatcatcaacgtgtgcttgaag |
708 |
Q |
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| T |
43985503 |
gaattggctaaagaaggaacaacctgcggaaaaaagaatgcagtggttgcgatttttggacttcttttgcttcctaggaatcatcaacgtgtgcttgaag |
43985404 |
T |
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| Q |
709 |
ccggtgctgttcacgcgcttgtttctattttgaataccttgtgcaacaaggaagagcttgttactgaaactttggctgttcttgcggcacttgctgagaa |
808 |
Q |
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| T |
43985403 |
ccggtgctgttcacgcgcttgtttctattttgaataccttgtgcaacaaggaagagcttgttactgaaactctggctgttcttgcggcacttgctgagaa |
43985304 |
T |
|
| Q |
809 |
ttttgatggagctaatgctgttttggaagcttctgcattgccgttgattgctgggctgttgcgatctgctccttcgcgtgctgcaaaggaacattgtgtt |
908 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43985303 |
ttttgatggagctaatgctgttttggaagcttctgcattgccgttgattactgggctgttgcgatctgctccttcgcgtgctgcaaaggaacattgtgtt |
43985204 |
T |
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| Q |
909 |
tcgatattgttgtctctatgtg-taatggt-gtgtggatg-tgctggtgttcttgctaag |
965 |
Q |
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| T |
43985203 |
tcgatattgttgtctctatgtgttaatggtggtgttgatgttgctggtgttcttgctaag |
43985144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 507 - 584
Target Start/End: Complemental strand, 35205912 - 35205835
Alignment:
| Q |
507 |
gaagcccgtcaaattgcagctgctataatattctatctttgttcagtgaaagaatatagaaaattaataggtgaaaat |
584 |
Q |
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|||||||||| | ||||||||| ||||||||| || || |||||||||||| || |||||||||||||| |||||| |
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| T |
35205912 |
gaagcccgtcgagttgcagctggtataatattttacctcacttcagtgaaagagtacagaaaattaataggcgaaaat |
35205835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 243 - 289
Target Start/End: Complemental strand, 35206170 - 35206124
Alignment:
| Q |
243 |
ttcggaacagagcaacagaagaataaagcagcttacgagattcgttt |
289 |
Q |
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| T |
35206170 |
ttcggaacagaggaacagaaaaacaaagcagcttatgagattcgttt |
35206124 |
T |
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