View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3212R-Insertion-10 (Length: 367)
Name: NF3212R-Insertion-10
Description: NF3212R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3212R-Insertion-10 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 7 - 367
Target Start/End: Original strand, 7999669 - 8000029
Alignment:
| Q |
7 |
caacgacaaatgcaaaccgaaaaagtgccgtcaagagtgcaagaagagttgtcctgtcgtcggaaccggaaaattatgtgttgaggttacttctgcgtcc |
106 |
Q |
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| T |
7999669 |
caacgacaaatgcaaaccgaaaaagtgtcgtcaagagtgcaagaagagttgtcctgtcgtcggaaccggaaaattatgtgttgaggttacttctgcgtcc |
7999768 |
T |
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| Q |
107 |
aagattgcttacatttccgaggaattgtgcattggatgcggtatttgtgttaaggtattattattctattcattaacttttttaaagatgctcgcttttg |
206 |
Q |
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| T |
7999769 |
aagattgcttacatttccgaggaattgtgcattggatgcggtatttgtgttaaggtattattattctattcattcacttttttaaagatgctcgcttttg |
7999868 |
T |
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| Q |
207 |
ttaatacttaataatgaataatgggtttggtttatgtgatgatgatattgctgtagaaatgtccttttggagccatcgaaattatcaacttgccaaagaa |
306 |
Q |
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| T |
7999869 |
ttaatacttaataatgaataatgggtttggtttatgtgatgatgatattgctgtagaaatgtccttttggagccatcgaaattatcaacttgccaaaaaa |
7999968 |
T |
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| Q |
307 |
tttggacaaagataccactcatagatatggtcctaatacctttaagcttcacaggtgtgtg |
367 |
Q |
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| T |
7999969 |
tttggacaaagataccactcatagatatggtcctaatacctttaagcttcacaggtgtgtg |
8000029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 7 - 367
Target Start/End: Complemental strand, 7908907 - 7908534
Alignment:
| Q |
7 |
caacgacaaatgcaaaccgaaaaagtgccgtcaagagtgcaagaagagttgtcctgtcgtcggaaccggaaaattatgtgttgaggttacttctgcgtcc |
106 |
Q |
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| T |
7908907 |
caacgacaaatgcagaccgctaaagtgtcatcaagagtgccagatgatttgtcctgtcgtcataattggaaaatcatgtgttgaggttactcctgagtcc |
7908808 |
T |
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| Q |
107 |
aagattgcttacatttccgaggaattgtgcattggatgcggtatttgtgttaaggtatta-ttattc--tattcattaacttt----------------t |
187 |
Q |
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| T |
7908807 |
aagattgcttacatatctgaggaattgtgcattggatgccgtatgtgtgttaaggtattatttattcattattcattcacttttttattttttattttat |
7908708 |
T |
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| Q |
188 |
ttaaagatgctcgcttttgttaatacttaataatgaataatgggtttggtttatgtgatgatgatattgctgtagaaatgtccttttggagccatcgaaa |
287 |
Q |
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| T |
7908707 |
ttaaagatgctcgcttttgttaata-ataataa-caataatgggttt-gtttatgtgatggtgattttgctgcagagatgtccttttggagccatcgaaa |
7908611 |
T |
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| Q |
288 |
ttatcaacttgccaaagaatttggacaaagataccactcatagatatggtcctaatacctttaagcttcacaggtgtgtg |
367 |
Q |
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| T |
7908610 |
ttatcaac---actaaggattttaacaaagatatcactcatagatatggtcctaatacctttatgcttcgcaggtgtgtg |
7908534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 235 - 367
Target Start/End: Original strand, 51514984 - 51515116
Alignment:
| Q |
235 |
ggtttatgtgatgatgatattgctgtagaaatgtccttttggagccatcgaaattatcaacttgccaaagaatttggacaaagataccactcatagatat |
334 |
Q |
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| T |
51514984 |
ggtttatgtgatgatgatattgctgtagaaatgtccttttgaagctatccaaattatcaacttgccaaaggatttggacaaagataccactcatagatac |
51515083 |
T |
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| Q |
335 |
ggtcctaatacctttaagcttcacaggtgtgtg |
367 |
Q |
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| T |
51515084 |
ggtcctaatacttttaagctacacaggtttgtg |
51515116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 74 - 168
Target Start/End: Original strand, 51514830 - 51514924
Alignment:
| Q |
74 |
ggaaaattatgtgttgaggttacttctgcgtccaagattgcttacatttccgaggaattgtgcattggatgcggtatttgtgttaaggtattatt |
168 |
Q |
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| T |
51514830 |
ggaagattatgtgttgaggttacctctgcttcgaaaattgcttacatatctgaggaattgtgcattggatgtggtatctgtgttaaggtattatt |
51514924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 51514649 - 51514717
Alignment:
| Q |
7 |
caacgacaaatgcaaaccgaaaaagtgccgtcaagagtgcaagaagagttgtcctgtcgtcggaaccgg |
75 |
Q |
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| T |
51514649 |
caacgacagatgcaaacccaaaaagtgtcgtcaagaatgtaagaagagttgtcctgtcgtcagaaccgg |
51514717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 253 - 363
Target Start/End: Complemental strand, 1304493 - 1304383
Alignment:
| Q |
253 |
attgctgtagaaatgtccttttggagccatcgaaattatcaacttgccaaagaatttggacaaagataccactcatagatatggtcctaatacctttaag |
352 |
Q |
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| T |
1304493 |
attggtgtagaaatgtccttttgaagcaattaagattatcaacttgccggagaatttggacaaagaaacaactcatagatatggtcctaatacttttaag |
1304394 |
T |
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| Q |
353 |
cttcacaggtg |
363 |
Q |
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| T |
1304393 |
ctacacaggtg |
1304383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 74 - 165
Target Start/End: Complemental strand, 1304674 - 1304583
Alignment:
| Q |
74 |
ggaaaattatgtgttgaggttacttctgcgtccaagattgcttacatttccgaggaattgtgcattggatgcggtatttgtgttaaggtatt |
165 |
Q |
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| T |
1304674 |
ggaaaattgtgtattgaggttaattctgcatcgaagattgcttacctatccgaggaattgtgcaatggatgtggtatttgtgttaaggtatt |
1304583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 67
Target Start/End: Complemental strand, 1304840 - 1304784
Alignment:
| Q |
11 |
gacaaatgcaaaccgaaaaagtgccgtcaagagtgcaagaagagttgtcctgtcgtc |
67 |
Q |
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| T |
1304840 |
gacagatgcaagccgaaaaagtgtcgacaggagtgtaagaagagttgccctgtcgtc |
1304784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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