View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3212R-Insertion-12 (Length: 274)

Name: NF3212R-Insertion-12
Description: NF3212R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3212R-Insertion-12
NF3212R-Insertion-12
[»] chr4 (11 HSPs)
chr4 (9-274)||(31758490-31758758)
chr4 (10-108)||(2324728-2324828)
chr4 (10-106)||(2247648-2247744)
chr4 (9-101)||(21433941-21434035)
chr4 (20-91)||(21433860-21433933)
chr4 (34-90)||(15134555-15134613)
chr4 (34-106)||(15134660-15134734)
chr4 (11-78)||(19382299-19382366)
chr4 (10-77)||(42516514-42516581)
chr4 (10-51)||(993246-993287)
chr4 (34-103)||(52374892-52374963)
[»] chr2 (8 HSPs)
chr2 (10-103)||(18719708-18719801)
chr2 (18-76)||(8090921-8090979)
chr2 (20-77)||(16209378-16209435)
chr2 (34-87)||(1469730-1469785)
chr2 (10-90)||(6978958-6979038)
chr2 (34-99)||(9430230-9430297)
chr2 (10-90)||(42094272-42094353)
chr2 (13-87)||(39090369-39090445)
[»] chr3 (8 HSPs)
chr3 (9-106)||(37341200-37341294)
chr3 (14-103)||(3901566-3901656)
chr3 (13-79)||(40763440-40763506)
chr3 (14-71)||(3901508-3901565)
chr3 (12-90)||(36007426-36007506)
chr3 (34-104)||(36480681-36480753)
chr3 (13-77)||(11532507-11532571)
chr3 (10-103)||(19560604-19560699)
[»] chr1 (7 HSPs)
chr1 (35-90)||(40669023-40669078)
chr1 (10-88)||(40374106-40374183)
chr1 (10-90)||(7444269-7444351)
chr1 (34-90)||(34437690-34437748)
chr1 (10-90)||(38663639-38663721)
chr1 (10-55)||(23317934-23317979)
chr1 (11-67)||(2542772-2542828)
[»] chr7 (5 HSPs)
chr7 (10-103)||(26862982-26863077)
chr7 (16-77)||(49106980-49107041)
chr7 (13-90)||(5443602-5443680)
chr7 (10-103)||(10056692-10056787)
chr7 (34-90)||(12275728-12275784)
[»] chr6 (3 HSPs)
chr6 (10-107)||(1473586-1473685)
chr6 (37-91)||(10729959-10730013)
chr6 (10-103)||(12731623-12731718)
[»] chr8 (5 HSPs)
chr8 (20-77)||(35586482-35586539)
chr8 (12-103)||(8402549-8402640)
chr8 (10-77)||(40175963-40176030)
chr8 (61-99)||(23848245-23848283)
chr8 (9-86)||(42072654-42072731)
[»] chr5 (3 HSPs)
chr5 (10-78)||(3907723-3907793)
chr5 (20-73)||(33029501-33029554)
chr5 (41-103)||(42419992-42420056)
[»] scaffold0137 (1 HSPs)
scaffold0137 (12-103)||(8251-8343)


Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 9 - 274
Target Start/End: Complemental strand, 31758758 - 31758490
Alignment:
Q  9 agacccacatgatttggtggagcttatgtgaattttaaccaattaaatcgaatgtgttgaaaagtgtgttaaaatgtgtgtttttaccattcctcaaatt 108  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31758758 agacccacatgatttggtggagcttatgtgaattttaaccaatcaaatagaatgtgttgaaaagtgtgttaaaatgtgtgtttttaccattcctcaaatt 31758659  T
Q  109 ctaattgttttctaaattggtttcacatata---tcattcattttcttttctttattggtttcacagattcatttttctaattaatactgttgggttggg 205  Q
    |||||||||||||||||||||||||||||||   |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  31758658 ctaattgttttctaaattggtttcacatatactatcattcattttcttttttttattggtttcacagattcatttttctaattaatactgttgggttggg 31758559  T
Q  206 ctttcttctctttctatacattgggctgagtctcactcataccaacttcatgagcttttatccccacct 274  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  31758558 ctttcttctctttctatacattgggctgagtttcactcataccaacttcatgagcttttatccccacct 31758490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 10 - 108
Target Start/End: Complemental strand, 2324828 - 2324728
Alignment:
Q  10 gacccacatgatttggtggagcttatgtgaattttaaccaattaaatcgaatgtgttgaaaagtgt--gttaaaatgtgtgtttttaccattcctcaaat 107  Q
    |||||||||||||||||| | || |||||||||||||||||| |||  || | | |||||||||||  ||||||||||||||| ||| |||||||| |||    
T  2324828 gacccacatgatttggtgaaactcatgtgaattttaaccaatcaaagagagtatattgaaaagtgtgcgttaaaatgtgtgttgttatcattcctctaat 2324729  T
Q  108 t 108  Q
    |    
T  2324728 t 2324728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 106
Target Start/End: Original strand, 2247648 - 2247744
Alignment:
Q  10 gacccacatgatttggtggagcttatgtgaattttaaccaattaaatcgaatgtgttgaaaagtgtgttaaaatgtgtgtttttaccattcctcaaa 106  Q
    |||||||||||||||||||     |||| ||||||||||||| |||  || || |||| |||||||||||||||||||||| ||| |||||||||||    
T  2247648 gacccacatgatttggtgggatccatgttaattttaaccaatcaaagagagtgggttggaaagtgtgttaaaatgtgtgttgttagcattcctcaaa 2247744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 21433941 - 21434035
Alignment:
Q  9 agacccacatgatttggtggagcttatgtgaattttaaccaattaaatcgaatgtgttgaaaagtg--tgttaaaatgtgtgtttttaccattcc 101  Q
    ||||||||||||||||||||     |||||||||||||||||| ||   || ||||||||||||||  ||||||||||||||||  |||||||||    
T  21433941 agacccacatgatttggtgggatccatgtgaattttaaccaatcaatgagagtgtgttgaaaagtgtatgttaaaatgtgtgttgctaccattcc 21434035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 21433933 - 21433860
Alignment:
Q  20 atttggtggagcttatgtgaattttaaccaattaaatcgaatgtgttgaaaa--gtgtgttaaaatgtgtgttt 91  Q
    |||||||||  || |||||||||||||||||| |||  || |||||||||||  ||||||||||||||||||||    
T  21433933 atttggtgggtctcatgtgaattttaaccaatcaaagagagtgtgttgaaaaatgtgtgttaaaatgtgtgttt 21433860  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 34 - 90
Target Start/End: Complemental strand, 15134613 - 15134555
Alignment:
Q  34 atgtgaattttaaccaattaaatcgaatgtgttgaaaa--gtgtgttaaaatgtgtgtt 90  Q
    |||||||||||||||||| |||  ||||||||||||||  |||||||||||| ||||||    
T  15134613 atgtgaattttaaccaataaaagagaatgtgttgaaaaatgtgtgttaaaatttgtgtt 15134555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 34 - 106
Target Start/End: Original strand, 15134660 - 15134734
Alignment:
Q  34 atgtgaattttaaccaattaaatcgaatgtgttgaaaagtgtg--ttaaaatgtgtgtttttaccattcctcaaa 106  Q
    |||||||||||||||||| | |   | ||||||||||||||||  |||||||||||||| ||| |||||||||||    
T  15134660 atgtgaattttaaccaatcacagacagtgtgttgaaaagtgtgcgttaaaatgtgtgttgttagcattcctcaaa 15134734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 19382366 - 19382299
Alignment:
Q  11 acccacatgatttggtggagcttatgtgaattttaaccaattaaatcgaatgtgttgaaaagtgtgtt 78  Q
    ||||||||||||||||||     |||||||||||||||||| |||| || ||||||| ||||||||||    
T  19382366 acccacatgatttggtgggatccatgtgaattttaaccaatcaaatagagtgtgttggaaagtgtgtt 19382299  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 77
Target Start/End: Original strand, 42516514 - 42516581
Alignment:
Q  10 gacccacatgatttggtggagcttatgtgaattttaaccaattaaatcgaatgtgttgaaaagtgtgt 77  Q
    |||||||||| ||| |||   ||||||||||||| |||||| ||||  ||||||||||||||||||||    
T  42516514 gacccacatggtttagtgtgacttatgtgaatttaaaccaaataaagagaatgtgttgaaaagtgtgt 42516581  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 51
Target Start/End: Complemental strand, 993287 - 993246
Alignment:
Q  10 gacccacatgatttggtggagcttatgtgaattttaaccaat 51  Q
    |||||||||||||||||||  || ||||||||||||||||||    
T  993287 gacccacatgatttggtgggactcatgtgaattttaaccaat 993246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 103
Target Start/End: Complemental strand, 52374963 - 52374892
Alignment:
Q  34 atgtgaattttaaccaattaaatcgaatgtgttgaaaagtgtgt--taaaatgtgtgtttttaccattcctc 103  Q
    ||||||||||||| | || |||  || |||||||||||||||||  ||||||||||||| ||| ||||||||    
T  52374963 atgtgaattttaatctatcaaagagagtgtgttgaaaagtgtgtgttaaaatgtgtgttgttagcattcctc 52374892  T

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Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 10 - 103
Target Start/End: Complemental strand, 18719801 - 18719708
Alignment:
Q  10 gacccacatgatttggtggagcttatgtgaattttaaccaattaaatcgaatgtgttgaaaagtgtgttaaaatgtgtgtttttaccattcctc 103  Q
    |||||||||||||||||||| ||  ||||||||||||||||| |||  || ||||||||||| ||||||| ||||||||||  || ||||||||    
T  18719801 gacccacatgatttggtggaactcgtgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgttagaatgtgtgttgctagcattcctc 18719708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 8090921 - 8090979
Alignment:
Q  18 tgatttggtggagcttatgtgaattttaaccaattaaatcgaatgtgttgaaaagtgtg 76  Q
    ||||||||| || | ||||||||||||||| |||||||| || ||||||||||||||||    
T  8090921 tgatttggtagaacatatgtgaattttaacaaattaaattgagtgtgttgaaaagtgtg 8090979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 16209435 - 16209378
Alignment:
Q  20 atttggtggagcttatgtgaattttaaccaattaaatcgaatgtgttgaaaagtgtgt 77  Q
    |||||||||| || ||||||||||||||||||||||  || ||||||| |||||||||    
T  16209435 atttggtggaactcatgtgaattttaaccaattaaagagagtgtgttggaaagtgtgt 16209378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 87
Target Start/End: Complemental strand, 1469785 - 1469730
Alignment:
Q  34 atgtgaattttaaccaattaaatcgaatgtgttgaaaa--gtgtgttaaaatgtgt 87  Q
    ||||||||||||||||||||||| || |||||||||||   |||||||||||||||    
T  1469785 atgtgaattttaaccaattaaatagagtgtgttgaaaaatatgtgttaaaatgtgt 1469730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 6979038 - 6978958
Alignment:
Q  10 gacccacatgatttggtggagcttatgtgaattttaaccaattaaatcgaatgtgttgaaaagtgtgttaaaatgtgtgtt 90  Q
    ||||||||||||||| | |  || ||||||||||||||||||||||   ||||  ||||||| | ||||||||||||||||    
T  6979038 gacccacatgatttgataggactcatgtgaattttaaccaattaaagaaaatgcattgaaaaatttgttaaaatgtgtgtt 6978958  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 9430230 - 9430297
Alignment:
Q  34 atgtgaattttaaccaattaaatcgaatgtgttgaaaa--gtgtgttaaaatgtgtgtttttaccatt 99  Q
    |||||||||||||||||| |||| |||| |||||||||  |||||||| |||||||||| ||| ||||    
T  9430230 atgtgaattttaaccaatcaaatagaatatgttgaaaagtgtgtgttagaatgtgtgttattagcatt 9430297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 42094272 - 42094353
Alignment:
Q  10 gacccacatgatttggtggagcttatgtgaattttaaccaattaaatcgaatgtgttgaaaa--gtgtgttaaaatgtgtgtt 90  Q
    |||||||||||||||||||  |  |||||||||||||||||| |||  |  |||||||||||  |||||||||||||||||||    
T  42094272 gacccacatgatttggtgggacc-atgtgaattttaaccaatcaaagagtgtgtgttgaaaagtgtgtgttaaaatgtgtgtt 42094353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 39090445 - 39090369
Alignment:
Q  13 ccacatgatttggtggagcttatgtgaattttaaccaattaaatcgaatgtgttgaaaag--tgtgttaaaatgtgt 87  Q
    ||||||||||||||||| || || | |||||||| |||| |||| || ||||||||||||  || ||||||||||||    
T  39090445 ccacatgatttggtggaactcatataaattttaagcaataaaatagattgtgttgaaaagtatgggttaaaatgtgt 39090369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 106
Target Start/End: Complemental strand, 37341294 - 37341200
Alignment:
Q  9 agacccacatgatttggtggagcttatgtgaattttaaccaattaaatcgaatgtgttgaaaagtgtgttaaaatgtgtgtttttaccattcctcaaa 106  Q
    ||||||||||||||||||||| |  |||||||||||||| ||| |||  ||||||  || |||||||||||||||||||||| ||| |||||||||||    
T  37341294 agacccacatgatttggtggaccc-atgtgaattttaactaatcaaaaagaatgt--tggaaagtgtgttaaaatgtgtgttgttaacattcctcaaa 37341200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 103
Target Start/End: Original strand, 3901566 - 3901656
Alignment:
Q  14 cacatgatttggtggagcttatgtgaattttaaccaattaaatcgaatgtgttgaaaagtgtgt-taaaatgtgtgtttttaccattcctc 103  Q
    |||||||||||||||  |  |||||||||||||||||| |||  || ||||||||||||||||| | |||||| |||| ||| ||||||||    
T  3901566 cacatgatttggtgggacccatgtgaattttaaccaatcaaagagagtgtgttgaaaagtgtgtgttaaatgtatgttgttagcattcctc 3901656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 79
Target Start/End: Original strand, 40763440 - 40763506
Alignment:
Q  13 ccacatgatttggtggagcttatgtgaattttaaccaattaaatcgaatgtgttgaaaagtgtgtta 79  Q
    ||||||||||||||||| || | |||||||||||  |||||||  || | |||||||||||||||||    
T  40763440 ccacatgatttggtggaactcaggtgaattttaataaattaaagagagtatgttgaaaagtgtgtta 40763506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 3901565 - 3901508
Alignment:
Q  14 cacatgatttggtggagcttatgtgaattttaaccaattaaatcgaatgtgttgaaaa 71  Q
    |||||||||||||||  |  |||||||||||||||||| |||  ||||||||||||||    
T  3901565 cacatgatttggtgggacccatgtgaattttaaccaatcaaagagaatgtgttgaaaa 3901508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 90
Target Start/End: Original strand, 36007426 - 36007506
Alignment:
Q  12 cccacatgatttggtggagcttatgtgaattttaaccaattaaatcgaatgtgttgaaaagtg--tgttaaaatgtgtgtt 90  Q
    ||||||||||||   || ||| |||||||||||||||| | |||   ||||||||||||||||  ||||||||||||||||    
T  36007426 cccacatgatttatgggggctcatgtgaattttaaccactcaaagaaaatgtgttgaaaagtgaatgttaaaatgtgtgtt 36007506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 104
Target Start/End: Complemental strand, 36480753 - 36480681
Alignment:
Q  34 atgtgaattttaaccaattaaatcgaatgtgttgaaaag--tgtgttaaaatgtgtgtttttaccattcctca 104  Q
    |||||||||||||||||| |||  || ||||||| ||||  |||||||||||||||||| ||| |||| ||||    
T  36480753 atgtgaattttaaccaatcaaagagagtgtgttggaaagggtgtgttaaaatgtgtgttgttagcatttctca 36480681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 11532507 - 11532571
Alignment:
Q  13 ccacatgatttggtggagcttatgtgaattttaaccaattaaatcgaatgtgttgaaaagtgtgt 77  Q
    ||||||||||||||||| |  |||||||||||||||||| |||  || ||||||  |||||||||    
T  11532507 ccacatgatttggtggaacccatgtgaattttaaccaatcaaagagagtgtgttagaaagtgtgt 11532571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 103
Target Start/End: Complemental strand, 19560699 - 19560604
Alignment:
Q  10 gacccacatgatttggtggagcttatgtgaattttaaccaattaaatcgaatgtgttgaaaagtgt--gttaaaatgtgtgtttttaccattcctc 103  Q
    |||||||||||||||||||  |  || ||||||| ||||||| ||| ||| ||| |||||||||||  |||| ||||| |||| ||| ||||||||    
T  19560699 gacccacatgatttggtgggacccatatgaatttcaaccaatcaaagcgagtgtattgaaaagtgtgcgttagaatgtatgttgttagcattcctc 19560604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 90
Target Start/End: Original strand, 40669023 - 40669078
Alignment:
Q  35 tgtgaattttaaccaattaaatcgaatgtgttgaaaagtgtgttaaaatgtgtgtt 90  Q
    ||||||||||||||||| |||  || ||||||||||||||||||||||||||||||    
T  40669023 tgtgaattttaaccaatcaaagagagtgtgttgaaaagtgtgttaaaatgtgtgtt 40669078  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 88
Target Start/End: Original strand, 40374106 - 40374183
Alignment:
Q  10 gacccacatgatttggtggagcttatgtgaattttaaccaattaaatcgaatgtgttgaaaagtgtgttaaaatgtgtg 88  Q
    ||||||||||||||||||| ||  |||||||||||||||||| |||| ||  || ||||||| ||||||||||||||||    
T  40374106 gacccacatgatttggtggggcc-atgtgaattttaaccaatcaaatagagcgtattgaaaaatgtgttaaaatgtgtg 40374183  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 7444351 - 7444269
Alignment:
Q  10 gacccacatgatttggtggagcttatgtgaattttaaccaattaaatcgaatgtgttgaaaa--gtgtgttaaaatgtgtgtt 90  Q
    |||||||||||||||||||    | | |||||||||||| ||||||   |||||||||||||  |||||||||||||||||||    
T  7444351 gacccacatgatttggtgggaactctttgaattttaaccgattaaagaaaatgtgttgaaaaatgtgtgttaaaatgtgtgtt 7444269  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 34 - 90
Target Start/End: Original strand, 34437690 - 34437748
Alignment:
Q  34 atgtgaattttaaccaattaaatcgaatgtgttgaaaagt--gtgttaaaatgtgtgtt 90  Q
    |||||||||||||||||| |||  || |||||||||||||  |||||||||||||||||    
T  34437690 atgtgaattttaaccaatcaaagagagtgtgttgaaaagtgcgtgttaaaatgtgtgtt 34437748  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 38663721 - 38663639
Alignment:
Q  10 gacccacatgatttggtggagcttatgtgaattttaaccaattaaatcgaatgtgttgaaaa--gtgtgttaaaatgtgtgtt 90  Q
    |||||| ||||||||||||  | |||||||||| |||||||| |||  || |||||||||||   ||||||||||||||||||    
T  38663721 gacccatatgatttggtgggacctatgtgaattgtaaccaatcaaagagagtgtgttgaaaaatatgtgttaaaatgtgtgtt 38663639  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 23317979 - 23317934
Alignment:
Q  10 gacccacatgatttggtggagcttatgtgaattttaaccaattaaa 55  Q
    |||||||||||||||||||  | ||||||||||||||| |||||||    
T  23317979 gacccacatgatttggtgggacctatgtgaattttaacaaattaaa 23317934  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 2542772 - 2542828
Alignment:
Q  11 acccacatgatttggtggagcttatgtgaattttaaccaattaaatcgaatgtgttg 67  Q
    |||||||||||||||||||    |||||||||||||||||| |||  ||||||||||    
T  2542772 acccacatgatttggtggaagccatgtgaattttaaccaatcaaagagaatgtgttg 2542828  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 10 - 103
Target Start/End: Original strand, 26862982 - 26863077
Alignment:
Q  10 gacccacatgatttggtggagcttatgtgaattttaaccaattaaatcgaatgtgttgaaaagtgtg--ttaaaatgtgtgtttttaccattcctc 103  Q
    |||||||||||||||||||  |  ||||||||||||||||||||||  || | || |||||||||||  ||||||||||||||  || ||||||||    
T  26862982 gacccacatgatttggtgggacccatgtgaattttaaccaattaaagagagtttgatgaaaagtgtgtattaaaatgtgtgttgctagcattcctc 26863077  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 49106980 - 49107041
Alignment:
Q  16 catgatttggtggagcttatgtgaattttaaccaattaaatcgaatgtgttgaaaagtgtgt 77  Q
    |||||||||||||  | ||||||||||||||||||| |||  || |||||||||||||||||    
T  49106980 catgatttggtgggacctatgtgaattttaaccaatcaaagagagtgtgttgaaaagtgtgt 49107041  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 90
Target Start/End: Original strand, 5443602 - 5443680
Alignment:
Q  13 ccacatgatttggtggagcttatgtgaattttaaccaattaaatcgaatgtgttgaaaa--gtgtgttaaaatgtgtgtt 90  Q
    |||||| ||||||||||||| |||||||||||||||||| |||   | | |||||||||  |||||||| ||||||||||    
T  5443602 ccacataatttggtggagct-atgtgaattttaaccaatcaaagaaagtatgttgaaaaatgtgtgttagaatgtgtgtt 5443680  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 103
Target Start/End: Original strand, 10056692 - 10056787
Alignment:
Q  10 gacccacatgatttggtggagcttatgtgaattttaaccaattaaatcgaatgtgttgaaaagt--gtgttaaaatgtgtgtttttaccattcctc 103  Q
    |||||||||||||||| ||  |  || || |||||||| |||||||  || |||||||||||||  |||||| |||||||||| ||| ||||||||    
T  10056692 gacccacatgatttggagggacccatatggattttaactaattaaagagagtgtgttgaaaagtgcgtgttagaatgtgtgttgttagcattcctc 10056787  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 90
Target Start/End: Complemental strand, 12275784 - 12275728
Alignment:
Q  34 atgtgaattttaaccaattaaatcgaatgtgttgaaaagtgtgttaaaatgtgtgtt 90  Q
    |||||| |||||||||||| ||  || ||||||| ||||||||||| ||||||||||    
T  12275784 atgtgatttttaaccaattgaagagagtgtgttggaaagtgtgttagaatgtgtgtt 12275728  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 10 - 107
Target Start/End: Complemental strand, 1473685 - 1473586
Alignment:
Q  10 gacccacatgatttggtggagcttatgtgaattttaaccaattaaatcgaatgtgttgaaaa--gtgtgttaaaatgtgtgtttttaccattcctcaaat 107  Q
    |||||||||||||||||||| |  |||||||||||||||||| |||   | |||||||||||  |||| ||||||||||||||  || ||||| ||||||    
T  1473685 gacccacatgatttggtggaacccatgtgaattttaaccaatcaaagatagtgtgttgaaaaatgtgtattaaaatgtgtgttgctagcattcttcaaat 1473586  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 91
Target Start/End: Original strand, 10729959 - 10730013
Alignment:
Q  37 tgaattttaaccaattaaatcgaatgtgttgaaaagtgtgttaaaatgtgtgttt 91  Q
    |||||||||||| || |||  ||  ||||||||||||||||||||||||||||||    
T  10729959 tgaattttaaccgatcaaagagagcgtgttgaaaagtgtgttaaaatgtgtgttt 10730013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 103
Target Start/End: Original strand, 12731623 - 12731718
Alignment:
Q  10 gacccacatgatttggtggagcttatgtgaattttaaccaattaaatcgaatgtgttg--aaaagtgtgttaaaatgtgtgtttttaccattcctc 103  Q
    ||||||||||||||||||||   ||||| ||||||||||||| |||  || |||||||  ||| |||||||| ||| ||||||  || ||||||||    
T  12731623 gacccacatgatttggtggaagctatgtaaattttaaccaatcaaaaagagtgtgttggaaaatgtgtgttataatatgtgttgctagcattcctc 12731718  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 35586482 - 35586539
Alignment:
Q  20 atttggtggagcttatgtgaattttaaccaattaaatcgaatgtgttgaaaagtgtgt 77  Q
    |||||||||  | |||||||||||||| ||||||||  ||||||||||||||||||||    
T  35586482 atttggtgggtcctatgtgaattttaatcaattaaagagaatgtgttgaaaagtgtgt 35586539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 103
Target Start/End: Original strand, 8402549 - 8402640
Alignment:
Q  12 cccacatgatttggtggagcttatgtgaattttaaccaattaaatcgaatgtgttgaaaa--gtgtgttaaaatgtgtgtttttaccattcctc 103  Q
    ||||||||||||||||| ||  ||| || ||||||||||| ||||  | |||||||||||  |||||||||||||||||||  || ||||||||    
T  8402549 cccacatgatttggtggggcccatgagagttttaaccaatcaaat--agtgtgttgaaaagtgtgtgttaaaatgtgtgttgctagcattcctc 8402640  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 77
Target Start/End: Original strand, 40175963 - 40176030
Alignment:
Q  10 gacccacatgatttggtggagcttatgtgaattttaaccaattaaatcgaatgtgttgaaaagtgtgt 77  Q
    ||||||||| |||||||||  |  ||||||||||||||||||||||  || |||||| ||||||||||    
T  40175963 gacccacataatttggtgggacccatgtgaattttaaccaattaaaaggagtgtgttaaaaagtgtgt 40176030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 99
Target Start/End: Complemental strand, 23848283 - 23848245
Alignment:
Q  61 tgtgttgaaaagtgtgttaaaatgtgtgtttttaccatt 99  Q
    |||||||||||||||||||||||||||||| ||| ||||    
T  23848283 tgtgttgaaaagtgtgttaaaatgtgtgttgttagcatt 23848245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 86
Target Start/End: Complemental strand, 42072731 - 42072654
Alignment:
Q  9 agacccacatgatttggtggagcttatgtgaattttaaccaattaaatcgaatgtgttgaaaagtgtgttaaaatgtg 86  Q
    ||||||| ||||||||||||  |  |||||||| ||||||||| |||  || |||||||||  |||||||||||||||    
T  42072731 agacccatatgatttggtgggacccatgtgaatgttaaccaatcaaagagagtgtgttgaagtgtgtgttaaaatgtg 42072654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 3907723 - 3907793
Alignment:
Q  10 gacccacatgatttggtggagcttatgtgaattttaaccaattaaatcgaatgtgttg--aaaagtgtgtt 78  Q
    |||||||||||||||||||  |  |||||||||||||||||| |||  ||||||||||  |||||||||||    
T  3907723 gacccacatgatttggtgggacccatgtgaattttaaccaatcaaaaagaatgtgttggaaaaagtgtgtt 3907793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 33029554 - 33029501
Alignment:
Q  20 atttggtggagcttatgtgaattttaaccaattaaatcgaatgtgttgaaaagt 73  Q
    |||||||||  ||||| ||||||||||| |||||||  ||||||||||||||||    
T  33029554 atttggtgggacttatatgaattttaactaattaaagagaatgtgttgaaaagt 33029501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 41 - 103
Target Start/End: Complemental strand, 42420056 - 42419992
Alignment:
Q  41 ttttaaccaattaaatcgaatgtgttgaaaa--gtgtgttaaaatgtgtgtttttaccattcctc 103  Q
    |||||||||||||||  ||||||||||||||  |||||||| |||| ||||| ||| ||||||||    
T  42420056 ttttaaccaattaaagagaatgtgttgaaaaatgtgtgttagaatgagtgttgttagcattcctc 42419992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 103
Target Start/End: Original strand, 8251 - 8343
Alignment:
Q  12 cccacatgatttggtggagcttatgtgaattttaaccaattaaatcgaatgtgttgaaaagtgtgt-taaaatgtgtgtttttaccattcctc 103  Q
    ||||||| |||||||||   | |||||||||||| ||||| |||  ||||| |||||||||||||| | |||||| |||| ||| ||||||||    
T  8251 cccacataatttggtgggattcatgtgaattttagccaatcaaaaagaatgcgttgaaaagtgtgtgttaaatgtatgttgttagcattcctc 8343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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