View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3212R-Insertion-15 (Length: 137)

Name: NF3212R-Insertion-15
Description: NF3212R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3212R-Insertion-15
NF3212R-Insertion-15
[»] chr4 (12 HSPs)
chr4 (10-137)||(2546799-2546926)
chr4 (63-130)||(2547206-2547273)
chr4 (63-111)||(2621482-2621530)
chr4 (56-111)||(5106626-5106681)
chr4 (61-111)||(2367980-2368030)
chr4 (61-111)||(2518914-2518964)
chr4 (62-111)||(2391337-2391386)
chr4 (62-119)||(2471729-2471786)
chr4 (62-111)||(5035303-5035352)
chr4 (39-111)||(2381686-2381758)
chr4 (62-110)||(2467224-2467272)
chr4 (76-111)||(2625591-2625626)


Alignment Details
Target: chr4 (Bit Score: 120; Significance: 9e-62; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 120; E-Value: 9e-62
Query Start/End: Original strand, 10 - 137
Target Start/End: Complemental strand, 2546926 - 2546799
Alignment:
Q  10 acttctttgaagaatttcccgactctcaattgttctgagattacttgtgtacacaagaatgatttattcttcattgttgattgttttcctttactcgaag 109  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  2546926 acttatttgaagaatttcccgactctcaattgttctgagattacttgtgtacacaagaatgatttattcttcattgctgattgttttcctttactcgaag 2546827  T
Q  110 aattcaccctgatggaagaattcaaccc 137  Q
    ||||||||||||||||||||||||||||    
T  2546826 aattcaccctgatggaagaattcaaccc 2546799  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 63 - 130
Target Start/End: Complemental strand, 2547273 - 2547206
Alignment:
Q  63 caagaatgatttattcttcattgttgattgttttcctttactcgaagaattcaccctgatggaagaat 130  Q
    ||||||||||||||||||||||| ||||||||| |||||||| |||||| ||||||| ||||||||||    
T  2547273 caagaatgatttattcttcattgctgattgtttccctttacttgaagaactcaccctaatggaagaat 2547206  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 2621482 - 2621530
Alignment:
Q  63 caagaatgatttattcttcattgttgattgttttcctttactcgaagaa 111  Q
    |||||||||| |||||||| ||| ||||||||| |||||||||||||||    
T  2621482 caagaatgatctattcttccttgctgattgtttccctttactcgaagaa 2621530  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 56 - 111
Target Start/End: Original strand, 5106626 - 5106681
Alignment:
Q  56 gtgtacacaagaatgatttattcttcattgttgattgttttcctttactcgaagaa 111  Q
    ||||| |||||| |||| | |||||||||| ||||||||| |||||||||||||||    
T  5106626 gtgtagacaagagtgatctcttcttcattgctgattgtttccctttactcgaagaa 5106681  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 111
Target Start/End: Original strand, 2367980 - 2368030
Alignment:
Q  61 cacaagaatgatttattcttcattgttgattgttttcctttactcgaagaa 111  Q
    ||||||| |||| | |||||||||| ||||||||| |||||||||||||||    
T  2367980 cacaagagtgatctcttcttcattgctgattgtttccctttactcgaagaa 2368030  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 111
Target Start/End: Complemental strand, 2518964 - 2518914
Alignment:
Q  61 cacaagaatgatttattcttcattgttgattgttttcctttactcgaagaa 111  Q
    |||||||||||| | |||||||||| ||||||||| ||||||||| |||||    
T  2518964 cacaagaatgatctcttcttcattgctgattgtttccctttactcaaagaa 2518914  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 111
Target Start/End: Original strand, 2391337 - 2391386
Alignment:
Q  62 acaagaatgatttattcttcattgttgattgttttcctttactcgaagaa 111  Q
    ||||||| ||| | ||||||||||||||||| || |||||||||||||||    
T  2391337 acaagaaggatatcttcttcattgttgattgcttccctttactcgaagaa 2391386  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 119
Target Start/End: Complemental strand, 2471786 - 2471729
Alignment:
Q  62 acaagaatgatttattcttcattgttgattgttttcctttactcgaagaattcaccct 119  Q
    |||||||| || | ||||| || | ||||||||||||||||||||||||| |||||||    
T  2471786 acaagaatcatctcttcttgatagctgattgttttcctttactcgaagaactcaccct 2471729  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 111
Target Start/End: Complemental strand, 5035352 - 5035303
Alignment:
Q  62 acaagaatgatttattcttcattgttgattgttttcctttactcgaagaa 111  Q
    ||||||||||| | ||||| |||| ||||||||| |||||||||||||||    
T  5035352 acaagaatgatcttttcttgattgctgattgtttccctttactcgaagaa 5035303  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 111
Target Start/End: Original strand, 2381686 - 2381758
Alignment:
Q  39 ttgttctgagattacttgtgtacacaagaatgatttattcttcattgttgattgttttcctttactcgaagaa 111  Q
    ||||||||| ||||||||  |  ||||||| ||||| || |||||||| ||||| || |||||||||||||||    
T  2381686 ttgttctgaaattacttggatcaacaagaaggatttcttattcattgtcgattgcttccctttactcgaagaa 2381758  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 110
Target Start/End: Complemental strand, 2467272 - 2467224
Alignment:
Q  62 acaagaatgatttattcttcattgttgattgttttcctttactcgaaga 110  Q
    ||||||| ||| | |||||||||| ||||||||| ||||||||||||||    
T  2467272 acaagaacgatcttttcttcattgctgattgtttccctttactcgaaga 2467224  T

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Target: chr4; HSP #12
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 76 - 111
Target Start/End: Original strand, 2625591 - 2625626
Alignment:
Q  76 ttcttcattgttgattgttttcctttactcgaagaa 111  Q
    ||||| |||||||||||||| |||||||||||||||    
T  2625591 ttctttattgttgattgtttccctttactcgaagaa 2625626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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