View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3212R-Insertion-19 (Length: 58)
Name: NF3212R-Insertion-19
Description: NF3212R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3212R-Insertion-19 |
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| [»] chr2 (1 HSPs) |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 51; Significance: 4e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-21
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 38952062 - 38952012
Alignment:
| Q |
8 |
agaagataaccaaattcattgtcgcgggcaatctcaaagccatcgatgttg |
58 |
Q |
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| T |
38952062 |
agaagataaccaaattcattgtcgcgggcaatctcaaagccatcgatgttg |
38952012 |
T |
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Target: chr3 (Bit Score: 47; Significance: 1e-18; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-18
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 15996156 - 15996106
Alignment:
| Q |
8 |
agaagataaccaaattcattgtcgcgggcaatctcaaagccatcgatgttg |
58 |
Q |
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| T |
15996156 |
agaagataaccaaattcattgtcgcaggcaatctcaaagccatcgatgttg |
15996106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 50717504 - 50717554
Alignment:
| Q |
8 |
agaagataaccaaattcattgtcgcgggcaatctcaaagccatcgatgttg |
58 |
Q |
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|||||||||||||||||| || || ||||||||||||||||||||||||| |
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| T |
50717504 |
agaagataaccaaattcagagttgccggcaatctcaaagccatcgatgttg |
50717554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 50795344 - 50795294
Alignment:
| Q |
8 |
agaagataaccaaattcattgtcgcgggcaatctcaaagccatcgatgttg |
58 |
Q |
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|||||||||||||||||| || || ||||||||||||||||||||||||| |
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| T |
50795344 |
agaagataaccaaattcagagttgccggcaatctcaaagccatcgatgttg |
50795294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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