View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3212R-Insertion-2 (Length: 815)
Name: NF3212R-Insertion-2
Description: NF3212R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3212R-Insertion-2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 683; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 683; E-Value: 0
Query Start/End: Original strand, 9 - 763
Target Start/End: Original strand, 36357450 - 36358204
Alignment:
| Q |
9 |
cctgctgcaccggatgcataattaacaccttgaactatgtctgcaccatgggtatttgcataaggtgggataaaatggtcaaatcccaaaagttcagctg |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36357450 |
cctgctgcaccggatgcataattaacaccttgaactatgtctgcaccatgggtatttgcataaggtgggataaaatggtcaaatcccaaaagttcagctg |
36357549 |
T |
|
| Q |
109 |
caatagtagaattcttggatcaatataaatgcaccaagaaagttgattaaagaatggcacaaaaataaaatgcaaaaatatgtgtatgtgaatctataat |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
36357550 |
caatagtagaattcttggatcaatataaatgcaccaagaaagttgattaaagaatggcacaaaattaaaatgcaaaaatatgtgtatgtaaatctataat |
36357649 |
T |
|
| Q |
209 |
tttccttgttatcaaaatttaggaaacacttaacacaattcaaaaccatgtcctaaatttgaatctaggattgtcgaaggtgcttaattaatcttagaat |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36357650 |
tttccttgttatcaaaatttaggaaacacttaacacaattcaaaaccatgtcctaaatttgaatctaggattgtcgaaggtgcttaattaatcttagaat |
36357749 |
T |
|
| Q |
309 |
ttagaccgaacttaattcaaatgttacaaaacataagatgaaaaccgtccgcaacttataaacatattttcaaactatatctcgtccaatatgaaacttg |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
36357750 |
ttagaccgaacttaattcaaatgttacaaaacataagatgagaaccgtccgcaacttataaacatattttcaaactatatctcgtccaatataaaacttg |
36357849 |
T |
|
| Q |
409 |
tcaacataaatatattcaaagtatgagaaaatattactgattatgtcaactgaagtacggccattggtaaatcttccggtaggaccagctggaaaatcaa |
508 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36357850 |
tcaacataaatatattcaaagtgtgagaaaatattactgattatgtcaattgaagtacggccattggtaaatcttccggtaggaccagctggaaaatcaa |
36357949 |
T |
|
| Q |
509 |
tcccataaggcctgtaattaactttggcatcggtagctaggttattgttgtttccgctgtctgataaagaatctccaaaaatgaaaagacatggtacttg |
608 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36357950 |
tcccataaggcctgtaattaactttggcatcggtagctaggttattgttgtttccactgtctgataaagaatctccaaaaatgaaaagacatggtacttg |
36358049 |
T |
|
| Q |
609 |
gggcttcccaacaacacaatatgttgcacttgagaagaagagaaacaccatccataacttagtcttatgacccatatcnnnnnnnnnnnntgtcaaaagt |
708 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
36358050 |
gggcttcccaacaacacaatatgttgcacttgagaagaagaaaaacaccatccataacttagtcttatgatccatatcaaaaagaaaaaatgtcaaaagt |
36358149 |
T |
|
| Q |
709 |
ttgttctgatccaaaatatttggaatccaagcacaagatttgcaggtgtagctaa |
763 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36358150 |
ttgttctgatccaaaatatttggaatccaagcacaagatttgcaggtgtagctaa |
36358204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 442 - 587
Target Start/End: Original strand, 5573428 - 5573573
Alignment:
| Q |
442 |
ttactgattatgtcaactgaagtacggccattggtaaatcttccggtaggaccagctggaaaatcaatcccataaggcctgtaattaactttggcatcgg |
541 |
Q |
| |
|
||||| |||||||||| || ||| | || ||||||||||||||||| ||||| ||||| ||||| |||||||| |||||||| ||| ||| || |
|
|
| T |
5573428 |
ttacttattatgtcaattgcagttctaccgttggtaaatcttccggttggacccatcggaaagtcaattccataaggtttgtaattagattttgcagagg |
5573527 |
T |
|
| Q |
542 |
tagctaggttattgttgtttccgctgtctgataaagaatctccaaa |
587 |
Q |
| |
|
||| ||||||||||||||||| || || ||||||||||||||||| |
|
|
| T |
5573528 |
taggaaggttattgttgtttccactatcagataaagaatctccaaa |
5573573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 443 - 610
Target Start/End: Original strand, 5576591 - 5576758
Alignment:
| Q |
443 |
tactgattatgtcaactgaagtacggccattggtaaatcttccggtaggaccagctggaaaatcaatcccataaggcctgtaattaactttggcatcggt |
542 |
Q |
| |
|
|||| |||||||||| |||||| || || ||||||||||||||||| || || || || ||||| |||||||| |||||||| ||| ||| ||| |
|
|
| T |
5576591 |
tacttattatgtcaattgaagttcgaccgttggtaaatcttccggttgggcccatcgggaagtcaattccataaggtttgtaattagattttgcagaggt |
5576690 |
T |
|
| Q |
543 |
agctaggttattgttgtttccgctgtctgataaagaatctccaaaaatgaaaagacatggtacttggg |
610 |
Q |
| |
|
| ||||| || |||||||| || || ||||||||||||||||| || ||||||||||| ||||||| |
|
|
| T |
5576691 |
gggaaggttgttattgtttccactatcagataaagaatctccaaagataaaaagacatggcacttggg |
5576758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University