View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3212R-Insertion-3 (Length: 808)

Name: NF3212R-Insertion-3
Description: NF3212R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3212R-Insertion-3
NF3212R-Insertion-3
[»] chr5 (6 HSPs)
chr5 (10-550)||(36198031-36198569)
chr5 (536-667)||(36197872-36198002)
chr5 (708-797)||(36197755-36197841)
chr5 (627-667)||(1349713-1349753)
chr5 (685-730)||(17367503-17367548)
chr5 (693-730)||(19134883-19134920)
[»] chr1 (13 HSPs)
chr1 (232-409)||(48676297-48676474)
chr1 (693-742)||(33241201-33241250)
chr1 (38-101)||(48676106-48676169)
chr1 (693-742)||(11981833-11981882)
chr1 (693-730)||(12016966-12017003)
chr1 (693-742)||(24686314-24686363)
chr1 (685-729)||(24705478-24705522)
chr1 (627-667)||(39842821-39842861)
chr1 (627-667)||(47795429-47795469)
chr1 (627-667)||(47795992-47796032)
chr1 (693-742)||(10338207-10338256)
chr1 (693-742)||(47794979-47795028)
chr1 (693-742)||(47795356-47795405)
[»] chr2 (6 HSPs)
chr2 (192-256)||(694640-694704)
chr2 (693-742)||(42679342-42679391)
chr2 (694-742)||(21479530-21479578)
chr2 (627-667)||(30668902-30668942)
chr2 (682-729)||(3256217-3256264)
chr2 (693-742)||(39844130-39844179)
[»] chr7 (10 HSPs)
chr7 (685-744)||(5800961-5801020)
chr7 (682-729)||(23895675-23895722)
chr7 (685-730)||(10281992-10282037)
chr7 (693-742)||(24162090-24162139)
chr7 (693-729)||(47222482-47222518)
chr7 (682-729)||(32988692-32988739)
chr7 (685-723)||(15640751-15640789)
chr7 (627-661)||(21696528-21696562)
chr7 (696-730)||(38320069-38320103)
chr7 (693-730)||(1644314-1644351)
[»] chr4 (10 HSPs)
chr4 (685-729)||(29993346-29993390)
chr4 (696-742)||(44886299-44886345)
chr4 (627-667)||(19298511-19298551)
chr4 (627-666)||(44886230-44886269)
chr4 (696-730)||(16436341-16436375)
chr4 (633-667)||(41692497-41692531)
chr4 (693-730)||(6046348-6046385)
chr4 (693-742)||(19298435-19298484)
chr4 (695-744)||(50715800-50715849)
chr4 (693-742)||(54175958-54176007)
[»] chr3 (12 HSPs)
chr3 (691-730)||(3781354-3781393)
chr3 (627-667)||(8708076-8708116)
chr3 (627-667)||(9059963-9060003)
chr3 (627-667)||(23027579-23027619)
chr3 (627-667)||(54356327-54356367)
chr3 (691-730)||(3821358-3821397)
chr3 (627-665)||(7335649-7335687)
chr3 (693-742)||(7433515-7433564)
chr3 (693-742)||(10334310-10334359)
chr3 (685-742)||(30498353-30498410)
chr3 (695-728)||(54143119-54143152)
chr3 (693-730)||(54982011-54982048)
[»] chr8 (7 HSPs)
chr8 (627-667)||(1153690-1153730)
chr8 (627-667)||(6007729-6007769)
chr8 (627-667)||(35308131-35308171)
chr8 (693-743)||(5765284-5765334)
chr8 (685-730)||(27965017-27965062)
chr8 (685-730)||(28022561-28022606)
chr8 (693-742)||(35308056-35308105)
[»] chr6 (2 HSPs)
chr6 (627-667)||(2258696-2258736)
chr6 (693-730)||(3306908-3306945)
[»] scaffold0016 (2 HSPs)
scaffold0016 (694-729)||(106006-106041)
scaffold0016 (627-666)||(106068-106107)


Alignment Details
Target: chr5 (Bit Score: 494; Significance: 0; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 10 - 550
Target Start/End: Complemental strand, 36198569 - 36198031
Alignment:
Q  10 ttgggcagtagaaaaccggggggaattggaccattgagcaaattgagaaggagatgaagatgcttaactttgcgttgaacaacaaggttaacccattttg 109  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  36198569 ttggggagtagaaaaccggggggaattggatcattgagcaaattgagaaggagatgaagattcttaactttgcgttgaacaacaaggttaacccattttg 36198470  T
Q  110 cgagattgggaatgctaagagatgtgacgtgattacgaccagcagcatattcaacgtccacgataaaactgccgatggaatgattaccagtggcttctcg 209  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  36198469 cgagattgggaatgctaagagatgtgacgtgattacgactagcagcatattcaacgtccacgataaaactgtcgatggaatgattaccagtggcttctcg 36198370  T
Q  210 cgagagcataaaatagtcgacaaactgattgaataggagaatggattcacagtctctcaatttgatatccgtgaaatcgaggataggaacacagcgccat 309  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36198369 cgagagcataaaatagtcgacgaactgattgaataggagaatggattcacagtctctcaatttgatatccgtgaaatcgaggataggaacacagcgccat 36198270  T
Q  310 agatgagtccacctcttggaaagaatggaagtggtaacagcgtttttggtagggttgaaagatagaatgtggcacaggatatcatctggtaaattgctta 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36198269 agatgagtccacctcttggaaagaatggaagtggtaacagcgtttttggtagggttgaaagatagaatgtggcacaggatatcatctggtaaattgctta 36198170  T
Q  410 ttctaacctcgcatggctccattgctgaaagaggttagaggcagctaaagaagcagaacggttttcagttgtattcaaattcgagggagagggatgctgg 509  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  36198169 ttctatcctcgcatggctccattgctgaaagaggttagaggcagctaaagaagcagaacggttttcagttgtattcaaattcgaggaagagggatgctgg 36198070  T
Q  510 ggacggttggtttcacactcaaaaatatcgtgtgcttttct 550  Q
    ||||||||||||| ||||||  |||||||||||||||||||    
T  36198069 ggacggttggttttacactc--aaatatcgtgtgcttttct 36198031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 536 - 667
Target Start/End: Complemental strand, 36198002 - 36197872
Alignment:
Q  536 atcgtgtgcttttctataaagggtttgtttgttacttattagaa--aaaataatgattttcacattcaataatttaacaaatgtttgttacggattagct 633  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||  |||||||||||||||||||||||||||||   ||   |    
T  36198002 atcgtgtgcttttctataaagggtttgtttgttacttattagaaagaaaaaaatgatttttccattcaataatttaacaaatgtttgttac---tt--tt 36197908  T
Q  634 caatcttttgaatcatattttc--tctctcctctaa 667  Q
    ||||||||||||||||||||||  ||||||||||||    
T  36197907 caatcttttgaatcatattttccttctctcctctaa 36197872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 708 - 797
Target Start/End: Complemental strand, 36197841 - 36197755
Alignment:
Q  708 aatttgaagttgtttttagatttgttatagattctaannnnnnnnnnaaagtcgtaacaagcaactagcatatgcaatactcttaaaagt 797  Q
    |||||||||||||||||||||||||||||||||||||           ||||||||||||||||| |||| |||||||||||||||||||    
T  36197841 aatttgaagttgtttttagatttgttatagattctaatttttttt---aagtcgtaacaagcaacaagcagatgcaatactcttaaaagt 36197755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 627 - 667
Target Start/End: Original strand, 1349713 - 1349753
Alignment:
Q  627 attagctcaatcttttgaatcatattttctctctcctctaa 667  Q
    ||||| |||||||||| ||||||||||||||||||||||||    
T  1349713 attagttcaatcttttaaatcatattttctctctcctctaa 1349753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 685 - 730
Target Start/End: Complemental strand, 17367548 - 17367503
Alignment:
Q  685 agaaactactcttaacagcttctaatttgaagttgtttttagattt 730  Q
    |||| |||||||||||||||||| |||||||| | |||||||||||    
T  17367548 agaagctactcttaacagcttctcatttgaagctatttttagattt 17367503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 693 - 730
Target Start/End: Original strand, 19134883 - 19134920
Alignment:
Q  693 ctcttaacagcttctaatttgaagttgtttttagattt 730  Q
    ||||||||||||||| |||||||| |||||||||||||    
T  19134883 ctcttaacagcttctcatttgaagctgtttttagattt 19134920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 3e-19; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 232 - 409
Target Start/End: Original strand, 48676297 - 48676474
Alignment:
Q  232 aactgattgaataggagaatggattcacagtctctcaatttgatatccgtgaaatcgaggataggaacacagcgccatagatgagtccacctcttggaaa 331  Q
    |||||||||||  |||||||||||||   || || ||||||||| |  ||||| || || | ||||| | ||| |||||||||| |||||||||| ||||    
T  48676297 aactgattgaagtggagaatggattctatgtttcccaatttgatgttggtgaagtcaagaaaaggaatagagcaccatagatgaatccacctctttgaaa 48676396  T
Q  332 gaatggaagtggtaacagcgtttttggtagggttgaaagatagaatgtggcacaggatatcatctggtaaattgctta 409  Q
    |||    |||| |||| |||| ||||||||| |||||||| ||||||||||  ||||||||||||| |||| ||||||    
T  48676397 gaactccagtgataacggcgtctttggtaggattgaaagagagaatgtggcgaaggatatcatctgataaactgctta 48676474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 693 - 742
Target Start/End: Original strand, 33241201 - 33241250
Alignment:
Q  693 ctcttaacagcttctaatttgaagttgtttttagatttgttatagattct 742  Q
    |||||||||||||||||||||||||||||||| ||||| || ||||||||    
T  33241201 ctcttaacagcttctaatttgaagttgttttttgattttttttagattct 33241250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 38 - 101
Target Start/End: Original strand, 48676106 - 48676169
Alignment:
Q  38 gaccattgagcaaattgagaaggagatgaagatgcttaactttgcgttgaacaacaaggttaac 101  Q
    |||||||||||| ||||||||| ||||| ||||||| ||||||| ||| ||||||||| |||||    
T  48676106 gaccattgagcatattgagaagaagatggagatgctgaactttgagtttaacaacaagattaac 48676169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 693 - 742
Target Start/End: Original strand, 11981833 - 11981882
Alignment:
Q  693 ctcttaacagcttctaatttgaagttgtttttagatttgttatagattct 742  Q
    ||||||||||||||| |||||||| ||||||||||||| || ||||||||    
T  11981833 ctcttaacagcttctcatttgaagctgtttttagattttttttagattct 11981882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 693 - 730
Target Start/End: Original strand, 12016966 - 12017003
Alignment:
Q  693 ctcttaacagcttctaatttgaagttgtttttagattt 730  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  12016966 ctcttaacagcttctcatttgaagttgtttttagattt 12017003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 693 - 742
Target Start/End: Original strand, 24686314 - 24686363
Alignment:
Q  693 ctcttaacagcttctaatttgaagttgtttttagatttgttatagattct 742  Q
    ||||||||||||||| |||||||||||||||||||||  || ||||||||    
T  24686314 ctcttaacagcttctcatttgaagttgtttttagattatttttagattct 24686363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 685 - 729
Target Start/End: Original strand, 24705478 - 24705522
Alignment:
Q  685 agaaactactcttaacagcttctaatttgaagttgtttttagatt 729  Q
    ||||||| ||||||||||||||| |||||||| ||||||||||||    
T  24705478 agaaactgctcttaacagcttctcatttgaagctgtttttagatt 24705522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 627 - 667
Target Start/End: Original strand, 39842821 - 39842861
Alignment:
Q  627 attagctcaatcttttgaatcatattttctctctcctctaa 667  Q
    ||||| |||||||||| ||||||||||||||||||||||||    
T  39842821 attagttcaatcttttaaatcatattttctctctcctctaa 39842861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 627 - 667
Target Start/End: Complemental strand, 47795469 - 47795429
Alignment:
Q  627 attagctcaatcttttgaatcatattttctctctcctctaa 667  Q
    |||||||||||||||| ||| ||||||||||||||||||||    
T  47795469 attagctcaatcttttaaattatattttctctctcctctaa 47795429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 627 - 667
Target Start/End: Original strand, 47795992 - 47796032
Alignment:
Q  627 attagctcaatcttttgaatcatattttctctctcctctaa 667  Q
    |||||||||||||||| ||| ||||||||||||||||||||    
T  47795992 attagctcaatcttttaaattatattttctctctcctctaa 47796032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 693 - 742
Target Start/End: Complemental strand, 10338256 - 10338207
Alignment:
Q  693 ctcttaacagcttctaatttgaagttgtttttagatttgttatagattct 742  Q
    ||||||||||||||| |||||||| ||||||||||||  || ||||||||    
T  10338256 ctcttaacagcttctcatttgaagctgtttttagattatttttagattct 10338207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 693 - 742
Target Start/End: Complemental strand, 47795028 - 47794979
Alignment:
Q  693 ctcttaacagcttctaatttgaagttgtttttagatttgttatagattct 742  Q
    ||||||||||||||| |||||||| ||||||||||||  || ||||||||    
T  47795028 ctcttaacagcttctcatttgaagctgtttttagattatttttagattct 47794979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 693 - 742
Target Start/End: Complemental strand, 47795405 - 47795356
Alignment:
Q  693 ctcttaacagcttctaatttgaagttgtttttagatttgttatagattct 742  Q
    ||||||||| ||||| |||||||| ||||||||||||| || ||||||||    
T  47795405 ctcttaacaacttctcatttgaagctgtttttagattttttttagattct 47795356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 3e-16; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 192 - 256
Target Start/End: Original strand, 694640 - 694704
Alignment:
Q  192 attaccagtggcttctcgcgagagcataaaatagtcgacaaactgattgaataggagaatggatt 256  Q
    |||||||| |||||||||||||||||||| | ||| |||||||||||||||| ||||||||||||    
T  694640 attaccagcggcttctcgcgagagcataacagagtagacaaactgattgaatcggagaatggatt 694704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 693 - 742
Target Start/End: Complemental strand, 42679391 - 42679342
Alignment:
Q  693 ctcttaacagcttctaatttgaagttgtttttagatttgttatagattct 742  Q
    ||||||||||||| | |||||||||||||||||||||| || ||||||||    
T  42679391 ctcttaacagcttttcatttgaagttgtttttagattttttttagattct 42679342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 694 - 742
Target Start/End: Original strand, 21479530 - 21479578
Alignment:
Q  694 tcttaacagcttctaatttgaagttgtttttagatttgttatagattct 742  Q
    |||||||||||||| |||||||| ||||||||||||| || ||||||||    
T  21479530 tcttaacagcttctcatttgaagctgtttttagattttttttagattct 21479578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 627 - 667
Target Start/End: Original strand, 30668902 - 30668942
Alignment:
Q  627 attagctcaatcttttgaatcatattttctctctcctctaa 667  Q
    ||||| |||||||||| ||||||||||||||||||||||||    
T  30668902 attagttcaatcttttaaatcatattttctctctcctctaa 30668942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 682 - 729
Target Start/End: Original strand, 3256217 - 3256264
Alignment:
Q  682 ttaagaaactactcttaacagcttctaatttgaagttgtttttagatt 729  Q
    ||||||| || ||||||||||||||| |||||||| ||||||||||||    
T  3256217 ttaagaagctgctcttaacagcttctcatttgaagctgtttttagatt 3256264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 693 - 742
Target Start/End: Complemental strand, 39844179 - 39844130
Alignment:
Q  693 ctcttaacagcttctaatttgaagttgtttttagatttgttatagattct 742  Q
    |||||| |||||||  |||||||||||||||||||||| || ||||||||    
T  39844179 ctcttaccagcttcacatttgaagttgtttttagattttttctagattct 39844130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 685 - 744
Target Start/End: Complemental strand, 5801020 - 5800961
Alignment:
Q  685 agaaactactcttaacagcttctaatttgaagttgtttttagatttgttatagattctaa 744  Q
    |||| |||||||||||||||||| |||||||| ||||||||||||| || ||||||||||    
T  5801020 agaagctactcttaacagcttctcatttgaagctgtttttagatttattttagattctaa 5800961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 682 - 729
Target Start/End: Complemental strand, 23895722 - 23895675
Alignment:
Q  682 ttaagaaactactcttaacagcttctaatttgaagttgtttttagatt 729  Q
    ||||||| ||| |||||||||||||| |||||||||||||||||||||    
T  23895722 ttaagaagctattcttaacagcttctcatttgaagttgtttttagatt 23895675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 685 - 730
Target Start/End: Complemental strand, 10282037 - 10281992
Alignment:
Q  685 agaaactactcttaacagcttctaatttgaagttgtttttagattt 730  Q
    |||| |||||||||||||||||| |||||||||||||||| |||||    
T  10282037 agaagctactcttaacagcttctcatttgaagttgttttttgattt 10281992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 693 - 742
Target Start/End: Complemental strand, 24162139 - 24162090
Alignment:
Q  693 ctcttaacagcttctaatttgaagttgtttttagatttgttatagattct 742  Q
    ||||||||||||||| |||||||||||||||||||||  || ||||||||    
T  24162139 ctcttaacagcttctcatttgaagttgtttttagattatttttagattct 24162090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 693 - 729
Target Start/End: Complemental strand, 47222518 - 47222482
Alignment:
Q  693 ctcttaacagcttctaatttgaagttgtttttagatt 729  Q
    ||||||||||||||| |||||||||||||||||||||    
T  47222518 ctcttaacagcttctcatttgaagttgtttttagatt 47222482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 682 - 729
Target Start/End: Original strand, 32988692 - 32988739
Alignment:
Q  682 ttaagaaactactcttaacagcttctaatttgaagttgtttttagatt 729  Q
    ||||||| ||| |||||| ||||||| |||||||||||||||||||||    
T  32988692 ttaagaagctattcttaatagcttctcatttgaagttgtttttagatt 32988739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 685 - 723
Target Start/End: Original strand, 15640751 - 15640789
Alignment:
Q  685 agaaactactcttaacagcttctaatttgaagttgtttt 723  Q
    ||||||||||||||||||||||| |||||||| ||||||    
T  15640751 agaaactactcttaacagcttctcatttgaagctgtttt 15640789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 627 - 661
Target Start/End: Original strand, 21696528 - 21696562
Alignment:
Q  627 attagctcaatcttttgaatcatattttctctctc 661  Q
    ||||| |||||||||||||||||||||||||||||    
T  21696528 attagttcaatcttttgaatcatattttctctctc 21696562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 696 - 730
Target Start/End: Original strand, 38320069 - 38320103
Alignment:
Q  696 ttaacagcttctaatttgaagttgtttttagattt 730  Q
    |||||||||||| ||||||||||||||||||||||    
T  38320069 ttaacagcttctcatttgaagttgtttttagattt 38320103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 693 - 730
Target Start/End: Complemental strand, 1644351 - 1644314
Alignment:
Q  693 ctcttaacagcttctaatttgaagttgtttttagattt 730  Q
    ||||||||||||||| |||||||| |||||||||||||    
T  1644351 ctcttaacagcttctcatttgaagctgtttttagattt 1644314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 685 - 729
Target Start/End: Complemental strand, 29993390 - 29993346
Alignment:
Q  685 agaaactactcttaacagcttctaatttgaagttgtttttagatt 729  Q
    |||| |||||||||||| |||||||||||||||||||||||||||    
T  29993390 agaacctactcttaacaacttctaatttgaagttgtttttagatt 29993346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 696 - 742
Target Start/End: Original strand, 44886299 - 44886345
Alignment:
Q  696 ttaacagcttctaatttgaagttgtttttagatttgttatagattct 742  Q
    |||||||||||| |||||||||||||||||||||| || ||||||||    
T  44886299 ttaacagcttctcatttgaagttgtttttagattttttttagattct 44886345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 627 - 667
Target Start/End: Complemental strand, 19298551 - 19298511
Alignment:
Q  627 attagctcaatcttttgaatcatattttctctctcctctaa 667  Q
    ||||| |||||||||| ||||||||||||||||||||||||    
T  19298551 attagttcaatcttttaaatcatattttctctctcctctaa 19298511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 627 - 666
Target Start/End: Original strand, 44886230 - 44886269
Alignment:
Q  627 attagctcaatcttttgaatcatattttctctctcctcta 666  Q
    ||||| |||||||||| |||||||||||||||||||||||    
T  44886230 attagttcaatcttttaaatcatattttctctctcctcta 44886269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 696 - 730
Target Start/End: Original strand, 16436341 - 16436375
Alignment:
Q  696 ttaacagcttctaatttgaagttgtttttagattt 730  Q
    |||||||||||| ||||||||||||||||||||||    
T  16436341 ttaacagcttcttatttgaagttgtttttagattt 16436375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 633 - 667
Target Start/End: Original strand, 41692497 - 41692531
Alignment:
Q  633 tcaatcttttgaatcatattttctctctcctctaa 667  Q
    |||||||||| ||||||||||||||||||||||||    
T  41692497 tcaatcttttaaatcatattttctctctcctctaa 41692531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 693 - 730
Target Start/End: Complemental strand, 6046385 - 6046348
Alignment:
Q  693 ctcttaacagcttctaatttgaagttgtttttagattt 730  Q
    ||||||||||||||| |||||||||| |||||||||||    
T  6046385 ctcttaacagcttctcatttgaagttatttttagattt 6046348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 693 - 742
Target Start/End: Complemental strand, 19298484 - 19298435
Alignment:
Q  693 ctcttaacagcttctaatttgaagttgtttttagatttgttatagattct 742  Q
    ||||||||||||||| ||||||||||||||||| | || || ||||||||    
T  19298484 ctcttaacagcttctcatttgaagttgtttttaaaatttttttagattct 19298435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 695 - 744
Target Start/End: Original strand, 50715800 - 50715849
Alignment:
Q  695 cttaacagcttctaatttgaagttgtttttagatttgttatagattctaa 744  Q
    ||||||| ||||| |||||| ||||||||||||||| || ||||||||||    
T  50715800 cttaacaacttctcatttgatgttgtttttagattttttttagattctaa 50715849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 693 - 742
Target Start/End: Original strand, 54175958 - 54176007
Alignment:
Q  693 ctcttaacagcttctaatttgaagttgtttttagatttgttatagattct 742  Q
    |||||||| |||||| |||||||| ||||||||||||| || ||||||||    
T  54175958 ctcttaaccgcttctcatttgaagctgtttttagattttttgtagattct 54176007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000008; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 691 - 730
Target Start/End: Complemental strand, 3781393 - 3781354
Alignment:
Q  691 tactcttaacagcttctaatttgaagttgtttttagattt 730  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  3781393 tactcttaacaacttctaatttgaagttgtttttagattt 3781354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 627 - 667
Target Start/End: Original strand, 8708076 - 8708116
Alignment:
Q  627 attagctcaatcttttgaatcatattttctctctcctctaa 667  Q
    ||||| |||||||||| ||||||||||||||||||||||||    
T  8708076 attagttcaatcttttaaatcatattttctctctcctctaa 8708116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 627 - 667
Target Start/End: Original strand, 9059963 - 9060003
Alignment:
Q  627 attagctcaatcttttgaatcatattttctctctcctctaa 667  Q
    ||||| |||||||||| ||||||||||||||||||||||||    
T  9059963 attagttcaatcttttaaatcatattttctctctcctctaa 9060003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 627 - 667
Target Start/End: Complemental strand, 23027619 - 23027579
Alignment:
Q  627 attagctcaatcttttgaatcatattttctctctcctctaa 667  Q
    ||||| |||||||||| ||||||||||||||||||||||||    
T  23027619 attagttcaatcttttaaatcatattttctctctcctctaa 23027579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 627 - 667
Target Start/End: Original strand, 54356327 - 54356367
Alignment:
Q  627 attagctcaatcttttgaatcatattttctctctcctctaa 667  Q
    ||||| |||||||||| ||||||||||||||||||||||||    
T  54356327 attagttcaatcttttaaatcatattttctctctcctctaa 54356367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 691 - 730
Target Start/End: Complemental strand, 3821397 - 3821358
Alignment:
Q  691 tactcttaacagcttctaatttgaagttgtttttagattt 730  Q
    ||||||||||| ||| ||||||||||||||||||||||||    
T  3821397 tactcttaacaacttttaatttgaagttgtttttagattt 3821358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 627 - 665
Target Start/End: Original strand, 7335649 - 7335687
Alignment:
Q  627 attagctcaatcttttgaatcatattttctctctcctct 665  Q
    ||||| |||||||||| ||||||||||||||||||||||    
T  7335649 attagttcaatcttttaaatcatattttctctctcctct 7335687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 693 - 742
Target Start/End: Complemental strand, 7433564 - 7433515
Alignment:
Q  693 ctcttaacagcttctaatttgaagttgtttttagatttgttatagattct 742  Q
    ||||||||||||||| ||||||||||||||||| || | || ||||||||    
T  7433564 ctcttaacagcttctcatttgaagttgtttttaaatattttttagattct 7433515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 693 - 742
Target Start/End: Original strand, 10334310 - 10334359
Alignment:
Q  693 ctcttaacagcttctaatttgaagttgtttttagatttgttatagattct 742  Q
    ||||||||||||||| |||||||| ||||||||||||  || ||||||||    
T  10334310 ctcttaacagcttctcatttgaagctgtttttagattatttttagattct 10334359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 685 - 742
Target Start/End: Complemental strand, 30498410 - 30498353
Alignment:
Q  685 agaaactactcttaacagcttctaatttgaagttgtttttagatttgttatagattct 742  Q
    |||| |||||||||||| ||||| ||||||||||  |||||||||| || ||||||||    
T  30498410 agaagctactcttaacaacttctcatttgaagttacttttagattttttttagattct 30498353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 695 - 728
Target Start/End: Original strand, 54143119 - 54143152
Alignment:
Q  695 cttaacagcttctaatttgaagttgtttttagat 728  Q
    ||||||||||||| ||||||||||||||||||||    
T  54143119 cttaacagcttctcatttgaagttgtttttagat 54143152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 693 - 730
Target Start/End: Original strand, 54982011 - 54982048
Alignment:
Q  693 ctcttaacagcttctaatttgaagttgtttttagattt 730  Q
    ||||||||||||||| ||||||||| ||||||||||||    
T  54982011 ctcttaacagcttctcatttgaagtcgtttttagattt 54982048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000005; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 627 - 667
Target Start/End: Complemental strand, 1153730 - 1153690
Alignment:
Q  627 attagctcaatcttttgaatcatattttctctctcctctaa 667  Q
    ||||| |||||||||| ||||||||||||||||||||||||    
T  1153730 attagttcaatcttttaaatcatattttctctctcctctaa 1153690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 627 - 667
Target Start/End: Original strand, 6007729 - 6007769
Alignment:
Q  627 attagctcaatcttttgaatcatattttctctctcctctaa 667  Q
    ||||| |||||||||| ||||||||||||||||||||||||    
T  6007729 attagttcaatcttttaaatcatattttctctctcctctaa 6007769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 627 - 667
Target Start/End: Complemental strand, 35308171 - 35308131
Alignment:
Q  627 attagctcaatcttttgaatcatattttctctctcctctaa 667  Q
    ||||| |||||||||| ||||||||||||||||||||||||    
T  35308171 attagttcaatcttttaaatcatattttctctctcctctaa 35308131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 693 - 743
Target Start/End: Complemental strand, 5765334 - 5765284
Alignment:
Q  693 ctcttaacagcttctaatttgaagttgtttttagatttgttatagattcta 743  Q
    ||||||||||||||| |||||||||| ||||||||||| ||  ||||||||    
T  5765334 ctcttaacagcttctcatttgaagttatttttagatttttttgagattcta 5765284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 685 - 730
Target Start/End: Complemental strand, 27965062 - 27965017
Alignment:
Q  685 agaaactactcttaacagcttctaatttgaagttgtttttagattt 730  Q
    |||| ||||||| |||||||||| |||||||| |||||||||||||    
T  27965062 agaagctactctcaacagcttctcatttgaagctgtttttagattt 27965017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 685 - 730
Target Start/End: Complemental strand, 28022606 - 28022561
Alignment:
Q  685 agaaactactcttaacagcttctaatttgaagttgtttttagattt 730  Q
    |||| ||||||| |||||||||| |||||||| |||||||||||||    
T  28022606 agaagctactctcaacagcttctcatttgaagctgtttttagattt 28022561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 693 - 742
Target Start/End: Complemental strand, 35308105 - 35308056
Alignment:
Q  693 ctcttaacagcttctaatttgaagttgtttttagatttgttatagattct 742  Q
    ||||||||| ||||| |||||||| ||||||||||||| || ||||||||    
T  35308105 ctcttaacaacttctcatttgaagctgtttttagattttttttagattct 35308056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 627 - 667
Target Start/End: Complemental strand, 2258736 - 2258696
Alignment:
Q  627 attagctcaatcttttgaatcatattttctctctcctctaa 667  Q
    ||||| |||||||||| ||||||||||||||||||||||||    
T  2258736 attagttcaatcttttaaatcatattttctctctcctctaa 2258696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 693 - 730
Target Start/End: Complemental strand, 3306945 - 3306908
Alignment:
Q  693 ctcttaacagcttctaatttgaagttgtttttagattt 730  Q
    ||||||||||||||| |||||||||||||| |||||||    
T  3306945 ctcttaacagcttctcatttgaagttgtttatagattt 3306908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 694 - 729
Target Start/End: Complemental strand, 106041 - 106006
Alignment:
Q  694 tcttaacagcttctaatttgaagttgtttttagatt 729  Q
    |||||||||||||| |||||||||||||||||||||    
T  106041 tcttaacagcttctcatttgaagttgtttttagatt 106006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 627 - 666
Target Start/End: Complemental strand, 106107 - 106068
Alignment:
Q  627 attagctcaatcttttgaatcatattttctctctcctcta 666  Q
    ||||| |||||||||| |||||||||||||||||||||||    
T  106107 attagttcaatcttttaaatcatattttctctctcctcta 106068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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