View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3212R-Insertion-5 (Length: 645)
Name: NF3212R-Insertion-5
Description: NF3212R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3212R-Insertion-5 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 7e-94; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 7e-94
Query Start/End: Original strand, 452 - 645
Target Start/End: Original strand, 1500590 - 1500786
Alignment:
| Q |
452 |
gagggaatgagcgttgagtgaaatatttgtaacccacaaaatccaaacatttaaccatttttcatctcatttccaaagctcaacctcaactcccaatttt |
551 |
Q |
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| T |
1500590 |
gagggaatgagcgttgagtgaaatatttgtaacccacaaaatccaaacatttaaccatttttcatctcatttccaaagctcaacctcaacttccaatttt |
1500689 |
T |
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| Q |
552 |
cctaaaatcggtctctataattggccttacggtgaaaatcgtcttctagttcgccaatttctccatctatttc---tattagtttattcaatcatca |
645 |
Q |
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| T |
1500690 |
cctaaaatcggtctctataattggccttacgatgaaaatcgtcttctagttcgccaatttctccatctatttctattattagtttattcaatcatca |
1500786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 9 - 102
Target Start/End: Original strand, 1500217 - 1500310
Alignment:
| Q |
9 |
gtatgcatgtatgtatatttgatatggtaaatagctttataccataactagtgtggtctcttcnnnnnnnccataaaaataatggaagttacaa |
102 |
Q |
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| T |
1500217 |
gtatgcatgtatgtatatttgatatggtaaatagctttataccatacctagtgtggtctcttctttttttccataaaaataatggaagttacaa |
1500310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 305 - 371
Target Start/End: Original strand, 1500427 - 1500493
Alignment:
| Q |
305 |
ataaaatcgtaggtatagaaaatatatacctacggaaacatcattgtatgaaggcatagacatctat |
371 |
Q |
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| T |
1500427 |
ataaaatcgtaggtatagaaaatatatacctacggaaacatcattgtatgaaggcatagacatctat |
1500493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 452 - 550
Target Start/End: Original strand, 1503969 - 1504066
Alignment:
| Q |
452 |
gagggaatgagcgttgagtgaaatatttgtaacccacaaaatccaaacatttaaccatttttcatctcatttccaaagctcaacctcaactcccaattt |
550 |
Q |
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| T |
1503969 |
gagggaatgagtggtgagtgaaatatttgtaacttgcaaaacccaaaaaattcaacgtttt-cagctcatttccaaaactcaacctcaactctcaattt |
1504066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 301
Target Start/End: Complemental strand, 6926294 - 6926225
Alignment:
| Q |
226 |
gaaagaattaattctttccaaattaattgannnnnnncatatgaatcactaacatattcaactaaatctttatttt |
301 |
Q |
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| T |
6926294 |
gaaagaattaattctttccaaattaattgatttttttcatatgaat------catattcaactaaatctttatttt |
6926225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 301
Target Start/End: Complemental strand, 501551 - 501482
Alignment:
| Q |
226 |
gaaagaattaattctttccaaattaattgannnnnnncatatgaatcactaacatattcaactaaatctttatttt |
301 |
Q |
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| T |
501551 |
gaaagaattaattctttccaaattaattgatttttttcatatgaat------catattcaactaaatctttatttt |
501482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 307 - 347
Target Start/End: Original strand, 11353713 - 11353753
Alignment:
| Q |
307 |
aaaatcgtaggtatagaaaatatatacctacggaaacatca |
347 |
Q |
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| T |
11353713 |
aaaatcgttggtatagaaaatatatacctacagaaaaatca |
11353753 |
T |
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