View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3212R-Insertion-6 (Length: 568)
Name: NF3212R-Insertion-6
Description: NF3212R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3212R-Insertion-6 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 449; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 104 - 568
Target Start/End: Complemental strand, 42162437 - 42161973
Alignment:
| Q |
104 |
gaataaaacagtaatagtatgagtatactatgaatcaataataataatattacaacaacaagaactcaagaaacaagtattgaaactcatgaaattaaag |
203 |
Q |
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| T |
42162437 |
gaataaaacagtaatagtatgagtatactatgaatcaataataataatattacaacaacaagaactcaagaaacaagtattgaaactcatgaaattaaag |
42162338 |
T |
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| Q |
204 |
acaagtagggcaatggactaacccattctcattacacttggggcaccttatctcacccccagcatcagcagcaaccaacttacaactcccaccacaatcc |
303 |
Q |
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| T |
42162337 |
acaagtagggcaatggactaacccattctcattacacttggggcaccttatctcacccccagcatcagaagtaaccaacttacaactcccaccacaatcc |
42162238 |
T |
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| Q |
304 |
caacaaggaacaaatctaaccccaccacatccaacacacccttgtcttccaacacctctctccacacgtgtcgtattcagtatccccccaagtcgacccg |
403 |
Q |
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| T |
42162237 |
caacaaggaacaaatctaaccccaccacatccaacacacccttgtcttccaacacctctctccacacgtgtcgcattcagtatcctcccaagtcgacccg |
42162138 |
T |
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| Q |
404 |
tttcattaagctccatcaactcatccaacccacccaaatacctacccttcacaaacacccttggcaaaaccacaccaacccctaactcttcctccgttaa |
503 |
Q |
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| T |
42162137 |
tttcattaagctccatcaactcatccaacccacccaaatacctacccttcacaaacacccttggcaaaaccacaccaacccctaactcttcctccgttaa |
42162038 |
T |
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| Q |
504 |
taacaactccttcacttcctttaaaaactctccatgaagtgccacgtcacgttcatcaaatacaa |
568 |
Q |
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| T |
42162037 |
taacaactccttcacttcctttaaaaactctccatgaagtgccacgtcacgttcatcaaatacaa |
42161973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 9 - 103
Target Start/End: Complemental strand, 42162557 - 42162463
Alignment:
| Q |
9 |
acatattctctagtcgtaccatacataatctataaatatattcccaagatgagattacaaacatgtactcaacatatacatatactacacttgag |
103 |
Q |
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| T |
42162557 |
acatattctctagtcgtaccatacataatctataaatatattcccgagatgagattacaaacatgtactcaacatatacatatactacacttgag |
42162463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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