View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3212R-Insertion-7 (Length: 535)
Name: NF3212R-Insertion-7
Description: NF3212R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3212R-Insertion-7 |
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Alignment Details
Target: chr5 (Bit Score: 377; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 12 - 512
Target Start/End: Original strand, 31684183 - 31684679
Alignment:
| Q |
12 |
atgatattacagcatttgaaacaacacatgggatgtcgttttgggattatcttgcacgtgactccaaaattaacaactcatttaacaaatcaatggcaaa |
111 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
31684183 |
atgatattacagcatttgaaacaacacatgggatgtcgtttagggattatcttgcacgtgactccaaaattaacaactcatttaacgaatcaatggcaaa |
31684282 |
T |
|
| Q |
112 |
agaaactcgattagtttccgatttgttggttgagaagtgcaagggagtgttcaatgaagtcgagtcattggttgatgttggaggaggtacggggaccatg |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
31684283 |
agaaactcgattagtttccgatttgttggttgagaagtgcaagggagtgttcaatgaagtcgagtcattggttgatgttggaggaggtacagggaccatg |
31684382 |
T |
|
| Q |
212 |
gcaaaaactcttgccaaatcattcccacaaatggagtgcattgtatttgatcttccacatgttgttgatggtttgcaaggaagtgaaaacttaaactatg |
311 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
31684383 |
gcaaaaactcttgccaaatcattcccacaaatggagtgcattgtatttgatcttccacatgttgttgatggtttgctaggaagtgaaaacttaaactatg |
31684482 |
T |
|
| Q |
312 |
ttggtggagacatgtttaaagaaattccgccaagagctgcaattttgttgaaggtaatannnnnnnnnnnnnagggatgttgaaggtaaatgttaaaata |
411 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
31684483 |
ttggtggagacatgtttaaagaaattccgccaacagctgcaattttgttgaaggtaata-tttttttttatgagggatgttgaaggtaaatgttaaaata |
31684581 |
T |
|
| Q |
412 |
ttcatctatggagnnnnnnnnnnnngtttgttttgaaaactcagtatccaatctaagaatcactaataacagccaattagataacatgtttcctggttct |
511 |
Q |
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||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||| |
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| T |
31684582 |
ttcatttatggagtttttgttta---tttgttttgaaaactcagtatccaatctaagaatcactaataacggccaattagataacatttttcctcgttct |
31684678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 35 - 368
Target Start/End: Original strand, 31711179 - 31711512
Alignment:
| Q |
35 |
acacatgggatgtcgttttgggattatcttgcacgtgactccaaaattaacaactcatttaacaaatcaatggcaaaagaaactcgattagtttccgatt |
134 |
Q |
| |
|
|||||||||||||| ||||| ||| ||||||||||||| |||||||||||| ||||||| | ||||||||||| || |||||||||||||| |||| |
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| T |
31711179 |
acacatgggatgtcaacatgggagtatgctgcacgtgactccgaaattaacaacttatttaacgagtcaatggcaaatgatactcgattagtttctgatt |
31711278 |
T |
|
| Q |
135 |
tgttggttgagaagtgcaagggagtgttcaatgaagtcgagtcattggttgatgttggaggaggtacggggaccatggcaaaaactcttgccaaatcatt |
234 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
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| T |
31711279 |
tgttggttgagaaatgcaagggagtgttcaatgaagttgagtcattggttgatgttggaggaggtacggggaccatggcaaagactcttgtcaaatcatt |
31711378 |
T |
|
| Q |
235 |
cccacaaatggagtgcattgtatttgatcttccacatgttgttgatggtttgcaaggaagtgaaaacttaaactatgttggtggagacatgtttaaagaa |
334 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||| ||| |
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| T |
31711379 |
cccacaaatggagtgcattgtgtttgatcttccacatgttgttgatggcttgcaaggaagtgaaaagctaagatatgttggtggagacatgtttaaggaa |
31711478 |
T |
|
| Q |
335 |
attccgccaagagctgcaattttgttgaaggtaa |
368 |
Q |
| |
|
||||| ||| || |||||||||||||||||||| |
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|
| T |
31711479 |
attccaccagcagatgcaattttgttgaaggtaa |
31711512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 12 - 368
Target Start/End: Original strand, 31734562 - 31734918
Alignment:
| Q |
12 |
atgatattacagcatttgaaacaacacatgggatgtcgttttgggattatcttgcacgtgactccaaaattaacaactcatttaacaaatcaatggcaaa |
111 |
Q |
| |
|
|||||| |||| |||||||||| ||||| ||||||| ||| ||||| ||| ||| ||||||||||| ||||||||| |||||| | ||||||||||| |
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|
| T |
31734562 |
atgatactacatcatttgaaacgacacacgggatgttgttatgggaatatgctgcgtgtgactccaaatttaacaacttatttaatgagtcaatggcaaa |
31734661 |
T |
|
| Q |
112 |
agaaactcgattagtttccgatttgttggttgagaagtgcaagggagtgttcaatgaagtcgagtcattggttgatgttggaggaggtacggggaccatg |
211 |
Q |
| |
|
|| ||| |||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| || ||||| ||| |
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|
| T |
31734662 |
tgatgctcaattagtttccaatttgttggttgagaagtgcaagggagtgttcaatgaatttgagtcattggttgatgttggaggaggaacagggactatg |
31734761 |
T |
|
| Q |
212 |
gcaaaaactcttgccaaatcattcccacaaatggagtgcattgtatttgatcttccacatgttgttgatggtttgcaaggaagtgaaaacttaaactatg |
311 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| || ||| ||||| |
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|
| T |
31734762 |
gcaaagacttttgccaaatcattcccacaaatggagtgcattgtgtttgatctaccacatgttgttgatggtttgcaaggaagtgagaatctaagctatg |
31734861 |
T |
|
| Q |
312 |
ttggtggagacatgtttaaagaaattccgccaagagctgcaattttgttgaaggtaa |
368 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | ||||||| |||||||||||| |
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|
| T |
31734862 |
ttggtggagacatgtttaaagaaattccgccaaccgatgcaattctgttgaaggtaa |
31734918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 19 - 368
Target Start/End: Original strand, 31702729 - 31703078
Alignment:
| Q |
19 |
tacagcatttgaaacaacacatgggatgtcgttttgggattatcttgcacgtgactccaaaattaacaactcatttaacaaatcaatggcaaaagaaact |
118 |
Q |
| |
|
|||| |||||||||| ||||| |||||| ||| ||||| ||| |||| ||||||||||| ||| ||||| ||| || | || ||||||| || ||| |
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| T |
31702729 |
tacaacatttgaaacgacacacaggatgttgttatgggaatatgttgcgtgtgactccaaatttagcaacttattcaatgagtccatggcaagtgatact |
31702828 |
T |
|
| Q |
119 |
cgattagtttccgatttgttggttgagaagtgcaagggagtgttcaatgaagtcgagtcattggttgatgttggaggaggtacggggaccatggcaaaaa |
218 |
Q |
| |
|
|||||||| || |||||||| |||||||||||| |||||| ||||||| | ||||||||||||||||||||||| || || |||||||||||||| |
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|
| T |
31702829 |
cgattagtgaccaatttgttgattgagaagtgcaggggagtattcaatgggttggagtcattggttgatgttggaggtggcacagggaccatggcaaagg |
31702928 |
T |
|
| Q |
219 |
ctcttgccaaatcattcccacaaatggagtgcattgtatttgatcttccacatgttgttgatggtttgcaaggaagtgaaaacttaaactatgttggtgg |
318 |
Q |
| |
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| ||||| |||||||||||||||||||||| | |||||||||||| ||||||||||||||||| |||||||| ||||| || |||||||||||||||| |
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|
| T |
31702929 |
cccttgctaaatcattcccacaaatggagtttagtgtatttgatctaccacatgttgttgatggcttgcaaggtagtgagaatctaaactatgttggtgg |
31703028 |
T |
|
| Q |
319 |
agacatgtttaaagaaattccgccaagagctgcaattttgttgaaggtaa |
368 |
Q |
| |
|
||||||||||||||||||||| |||| || || |||||||||||||||| |
|
|
| T |
31703029 |
agacatgtttaaagaaattcctccaacagacgccattttgttgaaggtaa |
31703078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 155 - 368
Target Start/End: Original strand, 31714268 - 31714481
Alignment:
| Q |
155 |
ggagtgttcaatgaagtcgagtcattggttgatgttggaggaggtacggggaccatggcaaaaactcttgccaaatcattcccacaaatggagtgcattg |
254 |
Q |
| |
|
||||||||||||| | | || ||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||| | ||||||| || |
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|
| T |
31714268 |
ggagtgttcaatggattggaatcattggttgatgttggaggaggcacagggaccatggcaaaggctcttgccaaatcattcccacaattagagtgcactg |
31714367 |
T |
|
| Q |
255 |
tatttgatcttccacatgttgttgatggtttgcaaggaagtgaaaacttaaactatgttggtggagacatgtttaaagaaattccgccaagagctgcaat |
354 |
Q |
| |
|
| |||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||| |||||||| |||||| ||| | ||| || |
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|
| T |
31714368 |
tgtttgatcttccacatgttgttgatggcttgcaaggaggtgataacttaaactatgttggtggagatatgtttaagagaattcctccagctgatgctat |
31714467 |
T |
|
| Q |
355 |
tttgttgaaggtaa |
368 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
31714468 |
tttgttgaaggtaa |
31714481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 230 - 328
Target Start/End: Original strand, 30570360 - 30570458
Alignment:
| Q |
230 |
tcattcccacaaatggagtgcattgtatttgatcttccacatgttgttgatggtttgcaaggaagtgaaaacttaaactatgttggtggagacatgttt |
328 |
Q |
| |
|
||||||||| | || |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||| || ||||||||| |
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|
| T |
30570360 |
tcattcccaaacattgagtgcattgtatttgatcttccacatgttgttgatggcttacaaggaagtgaaaacttaaaatatgttggaggtgacatgttt |
30570458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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