View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3212R-Insertion-8 (Length: 437)
Name: NF3212R-Insertion-8
Description: NF3212R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3212R-Insertion-8 |
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| [»] chr8 (4 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 371; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 8 - 437
Target Start/End: Original strand, 38120764 - 38121196
Alignment:
| Q |
8 |
agaaagaactaaaccgcaatcttcat---catcatcgaagcatcgcactcacaggccatggtgatcttcaatctcaaccattggcttgacctgaggcatg |
104 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38120764 |
agaaagaactaaaccgcaatcttcatcatcatcatcgaagcatcgcactcacaggccatggtgatcttcaatctcaaccattggcttgacctgaggcatg |
38120863 |
T |
|
| Q |
105 |
ggagacacacctgctgcagcagtgacatcagcagcacaatcaccacgtccatcaagagcagagcaggattcttccgtcgcctgaccagcagaatctgata |
204 |
Q |
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||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||| |
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| T |
38120864 |
ggagacacacctgctgcagtagtgacatcagcagcacaaccaccacgtccatcaggagcagagcaggtttcttccgtggcctgaccagcagaatctgata |
38120963 |
T |
|
| Q |
205 |
cagtagcagctctggctccgacacccgctccttccaatgctccttcacctcctaagatagtatcataagcagccgcaataggattgatatgcggaaaagg |
304 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38120964 |
cagtagcagctctggctccgacacccgctccttccgatgctccttcacctcctaagatagtatcataagcagccgcaataggattgatatgcggaaaagg |
38121063 |
T |
|
| Q |
305 |
caaatacacgttgtgcacaactatcttcacattgcgaatgacgtcagcaaccttaactctcacatagttaatcctcattggcgctgatgccactcctcca |
404 |
Q |
| |
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|||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
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| T |
38121064 |
caaatacacgctgtgcacaacaatcttcacattgcggatgacgtcagcaaccttaactctcacatagttaatcctcatcggcgctgatgtcactcctccg |
38121163 |
T |
|
| Q |
405 |
ccggaagtagtgatcagaagcggctgacctcgc |
437 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
38121164 |
ccggaagtagtgatcagaagcggctgacctcgc |
38121196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 8 - 437
Target Start/End: Complemental strand, 38609356 - 38608927
Alignment:
| Q |
8 |
agaaagaactaaaccgcaatcttcatcatcatcgaagcatcgcactcacaggccatggtgatcttcaatctcaaccattggcttgacctgaggcatggga |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38609356 |
agaaagaactaaaccgcaatcttcatcatcatcgaagcatcgcactcacaggccatggtgatcttcaatctcaaccattggcttgacctgaggcatggga |
38609257 |
T |
|
| Q |
108 |
gacacacctgctgcagcagtgacatcagcagcacaatcaccacgtccatcaagagcagagcaggattcttccgtcgcctgaccagcagaatctgatacag |
207 |
Q |
| |
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||||||||||||| || ||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| | ||||||| ||| || |
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| T |
38609256 |
gacacacctgctgtagtagtgacaccagcagcacaaccaccacgtccatcaagagcagagcaggtttcttccgtcgcctgacctggagaatctaataaag |
38609157 |
T |
|
| Q |
208 |
tagcagctctggctccgacacccgctccttccaatgctccttcacctcctaagatagtatcataagcagccgcaataggattgatatgcggaaaaggcaa |
307 |
Q |
| |
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| | |||| |||||| ||||| ||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38609156 |
ttgatgctccggctccaacacctgctccttccgacgctccttcacctcctaatatagtatcataagcagccgcaataggattgatatgcggaaaaggcaa |
38609057 |
T |
|
| Q |
308 |
atacacgttgtgcacaactatcttcacattgcgaatgacgtcagcaaccttaactctcacatagttaatcctcattggcgctgatgccactcctccaccg |
407 |
Q |
| |
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|||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||| |
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| T |
38609056 |
atacacactgtgcacaactatcttcacattgcggatgacgtcagcaaccttaactctcacatagttaatcctcatcggcgctgatgtcactcctccgccg |
38608957 |
T |
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| Q |
408 |
gaagtagtgatcagaagcggctgacctcgc |
437 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
38608956 |
gaagtagtgatcagaagcggctgacctcgc |
38608927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 8 - 437
Target Start/End: Complemental strand, 38794139 - 38793710
Alignment:
| Q |
8 |
agaaagaactaaaccgcaatcttcatcatcatcgaagcatcgcactcacaggccatggtgatcttcaatctcaaccattggcttgacctgaggcatggga |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38794139 |
agaaagaactaaaccgcaatcttcatcatcatcgaagcatcgcactcacaggccatggtgatcttcaatctcaaccattggcttgacctgaggcatggga |
38794040 |
T |
|
| Q |
108 |
gacacacctgctgcagcagtgacatcagcagcacaatcaccacgtccatcaagagcagagcaggattcttccgtcgcctgaccagcagaatctgatacag |
207 |
Q |
| |
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||||||||||||| || ||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| | ||||||| ||| || |
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| T |
38794039 |
gacacacctgctgtagtagtgacaccagcagcacaaccaccacgtccatcaagagcagagcaggtttcttccgtcgcctgacctggagaatctaataaag |
38793940 |
T |
|
| Q |
208 |
tagcagctctggctccgacacccgctccttccaatgctccttcacctcctaagatagtatcataagcagccgcaataggattgatatgcggaaaaggcaa |
307 |
Q |
| |
|
| | |||| |||||| ||||| ||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38793939 |
ttgatgctccggctccaacacctgctccttccgacgctccttcacctcctaatatagtatcataagcagccgcaataggattgatatgcggaaaaggcaa |
38793840 |
T |
|
| Q |
308 |
atacacgttgtgcacaactatcttcacattgcgaatgacgtcagcaaccttaactctcacatagttaatcctcattggcgctgatgccactcctccaccg |
407 |
Q |
| |
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|||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||| |
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| T |
38793839 |
atacacactgtgcacaactatcttcacattgcggatgacgtcagcaaccttaactctcacatagttaatcctcatcggcgctgatgtcactcctccgccg |
38793740 |
T |
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| Q |
408 |
gaagtagtgatcagaagcggctgacctcgc |
437 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
38793739 |
gaagtagtgatcagaagcggctgacctcgc |
38793710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 8 - 118
Target Start/End: Complemental strand, 34592957 - 34592844
Alignment:
| Q |
8 |
agaaagaactaaaccgcaatcttcatcatcatc---gaagcatcgcactcacaggccatggtgatcttcaatctcaaccattggcttgacctgaggcatg |
104 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||| | |
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| T |
34592957 |
agaaagaagtaaaccgcaatcttcatcatcatcattgaagcatcacactcacaggccatggtgatcttcaatctcaaccattggcctgacccgaggcacg |
34592858 |
T |
|
| Q |
105 |
ggagacacacctgc |
118 |
Q |
| |
|
|||||||||||||| |
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|
| T |
34592857 |
ggagacacacctgc |
34592844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 8 - 437
Target Start/End: Original strand, 28730341 - 28730770
Alignment:
| Q |
8 |
agaaagaactaaaccgcaatcttcatcatcatcgaagcatcgcactcacaggccatggtgatcttcaatctcaaccattggcttgacctgaggcatggga |
107 |
Q |
| |
|
|||||||| |||| |||||||||| |||| ||| || |||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
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|
| T |
28730341 |
agaaagaagtaaatcgcaatcttcgtcatgatcaaaccatcacactcacaggccatggtgatcttcaatctcaaacattggcctgacctgaggcatggga |
28730440 |
T |
|
| Q |
108 |
gacacacctgctgcagcagtgacatcagcagcacaatcaccacgtccatcaagagcagagcaggattcttccgtcgcctgaccagcagaatctgatacag |
207 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |
|
|
| T |
28730441 |
gacacacctgttgcagcagtgacatcagcagcacagccaccacgcccatcaagagcagagcaggtttcttcagtcgcctgaccagcagaatctgatacag |
28730540 |
T |
|
| Q |
208 |
tagcagctctggctccgacacccgctccttccaatgctccttcacctcctaagatagtatcataagcagccgcaataggattgatatgcggaaaaggcaa |
307 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
28730541 |
tagcagctctggctccgacacctgctccttccgatgctccttcacctcctaagatagtatcataagcatccgcaataggattgatatgcggaaaaggcaa |
28730640 |
T |
|
| Q |
308 |
atacacgttgtgcacaactatcttcacattgcgaatgacgtcagcaaccttaactctcacatagttaatcctcattggcgctgatgccactcctccaccg |
407 |
Q |
| |
|
|||||| | |||||||||||||||||||| || ||||||||||||||||| || || ||||||||||||||||| || ||| ||| ||||||||||||| |
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|
| T |
28730641 |
atacacactatgcacaactatcttcacattacggatgacgtcagcaaccttcaccctaacatagttaatcctcatcggtgctaatgtcactcctccaccg |
28730740 |
T |
|
| Q |
408 |
gaagtagtgatcagaagcggctgacctcgc |
437 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
28730741 |
gaagtagtgatcagaagcggctgacctcgc |
28730770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 33078554 - 33078483
Alignment:
| Q |
8 |
agaaagaactaaaccgcaatcttcatcatcatc---gaagcatcgcactcacaggccatggtgatcttcaat |
76 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||| ||||||||||| |||||| ||||||||||||||||| |
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|
| T |
33078554 |
agaaagaagtaaaccgcgatcttcatcatcatcattgaagcatcgcagtcacagcccatggtgatcttcaat |
33078483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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