View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3212R-Insertion-9 (Length: 403)

Name: NF3212R-Insertion-9
Description: NF3212R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3212R-Insertion-9
NF3212R-Insertion-9
[»] chr7 (1 HSPs)
chr7 (8-403)||(6703631-6704031)


Alignment Details
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 8 - 403
Target Start/End: Complemental strand, 6704031 - 6703631
Alignment:
Q  8 acatacaaattaatcatcatatttatgtgcacgaggccatgcattgagtgatattattatccattagtgtatatgtgccattatggtgtgtccaccatga 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6704031 acatacaaattaatcatcatatttatgtgcacgaggccatgcattgagtgatattattatccattagtgtatatgtgccattatggtgtgtccaccatga 6703932  T
Q  108 atgaaactttgaa-tacttcatgcacacacttcattatcgaattacatcactactacttgttgcctcattattacttaataaaggtttgaatccttacaa 206  Q
    ||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  6703931 atgcaactttgaaatacttcatgcacacacttcattatcgaattacaccactactacttgttgcctcataattacttaataaaggtttgaatccttacaa 6703832  T
Q  207 gaaacggggtagcatatacattggatctttaaataatcatgcatgctctta---agatatctatagctagatctgacctaggataaaatttctaag-nnn 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||| |||| |        
T  6703831 gaaacggggtagcatatacattggatctttaaataatcatgcatgctcttaattagatatctatagctagatctgacctaggataaaatatctacgtttt 6703732  T
Q  303 nnnnaacaatgattagatgctaacttttcattttcatttagcttatgctaccataggtttagcttttcttgttccatatatctgagatagtttaggtctt 402  Q
        ||||||||||||||| |||||| ||||||| |||||| | |||||||||||| ||||||||||||||||||||||||||||||||  |||||||||    
T  6703731 ttttaacaatgattagatgataacttatcatttttatttagatgatgctaccatagatttagcttttcttgttccatatatctgagataagttaggtctt 6703632  T
Q  403 g 403  Q
    |    
T  6703631 g 6703631  T

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