View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3212_1D_high_1 (Length: 449)
Name: NF3212_1D_high_1
Description: NF3212_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3212_1D_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 25 - 266
Target Start/End: Complemental strand, 784140 - 783902
Alignment:
| Q |
25 |
taaacctctagcaatttcggcatatttaaccggttgagctagaaattgtggacatcatcgtactaaattttaggcatcaaacaactaatttattgtaaat |
124 |
Q |
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| T |
784140 |
taaacctctagcaatttcggcatatttaaccggttgagctagaaattgtggacatcatcgtactaaattttaggcatcaaacagctaatttattgtaaat |
784041 |
T |
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| Q |
125 |
gattttccatatccataaaatagcatacattaataattaacaactactatatcataactcatattgctatcacacaattgtaatcatgtattcaaacaat |
224 |
Q |
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| T |
784040 |
gattttccatatccataaaatagcatacat---taattaacaactactatatcataactcatattgttatcacacaattgtaatcatgtattcaaacaat |
783944 |
T |
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| Q |
225 |
tctaaagtataaaaatcacagcaccaacactaatgttcatag |
266 |
Q |
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| T |
783943 |
tctaaagtataaaaatcacagcaccaacactaatgttcatag |
783902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 331 - 441
Target Start/End: Complemental strand, 783858 - 783748
Alignment:
| Q |
331 |
ctagggcaaaaatagaatgaaatcaaattgannnnnnnnaatacctgctaaaccactttcaccatctttcttctcatcttccttctcatctacctcctta |
430 |
Q |
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| T |
783858 |
ctagggcaaaaatagaataaaatcaaattgattttttttaatacctgctaaaccactttcaccatctttcttgtcatcttccttctcatctacttcctta |
783759 |
T |
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| Q |
431 |
gctttcatctc |
441 |
Q |
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| T |
783758 |
gctttcttctc |
783748 |
T |
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