View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3212_1D_high_13 (Length: 261)
Name: NF3212_1D_high_13
Description: NF3212_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3212_1D_high_13 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 24 - 261
Target Start/End: Original strand, 12551092 - 12551329
Alignment:
| Q |
24 |
agactagtctaaaaccattatataatatagttgatgatcgtgatcgcaaaacaacaaaggtcttgatgttataatttagatcgttgtcacaaacttttat |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12551092 |
agactagtctaaaaccattatataatatagttgatgatcgtgatcgcaaaacaacaaagatcttgatgttataatttagatcgttgtcacaaacttttat |
12551191 |
T |
|
| Q |
124 |
ttaaaatctaacactaaactaattgaacaaccaacattatttcagagttagaaatcaatttagttttcctgtttcataattaaattctgcgtcacaccct |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12551192 |
ttaaaatctaacactaaactaattgaacaaccaacattatttcagagttagaaatcaatttagttttcctgtttcataattaaattctgcgtcacaccct |
12551291 |
T |
|
| Q |
224 |
gcaacatcctacgtacgtttgttcacttcatgggcatg |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12551292 |
gcaacatcctacgtacgtttgttcacttcatgggcatg |
12551329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University