View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3212_1D_high_2 (Length: 435)
Name: NF3212_1D_high_2
Description: NF3212_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3212_1D_high_2 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 7 - 435
Target Start/End: Original strand, 6703594 - 6704027
Alignment:
| Q |
7 |
gagatgaacgattgtgcaaatggggagaacaagagaacaagacctaaactatctcagatatatggaacaagaaaagctaaacctatggtagcataagcta |
106 |
Q |
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| T |
6703594 |
gagaagaaggatggtgcaaatggggagaacaagagaacaagacctaacttatctcagatatatggaacaagaaaagctaaatctatggtagcatcatcta |
6703693 |
T |
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| Q |
107 |
aatgaaaatgaaaagttagcatctaatcattgctnnnnnnn-cttagaaattttatcctaggtcagatctagctatagatatct---taagagcatgcat |
202 |
Q |
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| T |
6703694 |
aataaaaatgataagttatcatctaatcattgttaaaaaaaacgtagatattttatcctaggtcagatctagctatagatatctaattaagagcatgcat |
6703793 |
T |
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| Q |
203 |
gattatttaaagatccaatgtatatgctaccccgtttcttgtaaggattcaaacctttattaagtaataatgaggcaacaagtagtagtgatgtaattcg |
302 |
Q |
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| T |
6703794 |
gattatttaaagatccaatgtatatgctaccccgtttcttgtaaggattcaaacctttattaagtaattatgaggcaacaagtagtagtggtgtaattcg |
6703893 |
T |
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| Q |
303 |
ataatgaagtgtgtgcatgaagta-ttcaaagtttcattcatggtggacacaccataatggcacatatacactaatggataataatatcactcaatgcat |
401 |
Q |
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| T |
6703894 |
ataatgaagtgtgtgcatgaagtatttcaaagttgcattcatggtggacacaccataatggcacatatacactaatggataataatatcactcaatgcat |
6703993 |
T |
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| Q |
402 |
ggcctcgtgcacataaatatgatgattaatttgt |
435 |
Q |
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| T |
6703994 |
ggcctcgtgcacataaatatgatgattaatttgt |
6704027 |
T |
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