View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3212_1D_high_6 (Length: 334)

Name: NF3212_1D_high_6
Description: NF3212_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3212_1D_high_6
NF3212_1D_high_6
[»] chr1 (15 HSPs)
chr1 (41-318)||(34309489-34309771)
chr1 (41-104)||(45525799-45525862)
chr1 (41-110)||(35190668-35190737)
chr1 (41-110)||(45531903-45531972)
chr1 (62-110)||(35476643-35476691)
chr1 (41-110)||(35147654-35147723)
chr1 (41-110)||(35200237-35200306)
chr1 (41-110)||(35205250-35205319)
chr1 (41-110)||(35295656-35295725)
chr1 (41-110)||(35212292-35212361)
chr1 (63-110)||(35248593-35248640)
chr1 (40-108)||(35252395-35252463)
chr1 (52-110)||(35219396-35219454)
chr1 (52-110)||(35225239-35225297)
chr1 (62-110)||(35216256-35216304)
[»] chr2 (1 HSPs)
chr2 (49-110)||(33138421-33138482)
[»] chr3 (5 HSPs)
chr3 (40-107)||(23332094-23332161)
chr3 (49-107)||(19246778-19246836)
chr3 (49-200)||(899486-899642)
chr3 (49-107)||(17664375-17664433)
chr3 (46-105)||(53924101-53924160)
[»] chr7 (2 HSPs)
chr7 (52-110)||(38634919-38634977)
chr7 (53-110)||(38632183-38632240)


Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 41 - 318
Target Start/End: Complemental strand, 34309771 - 34309489
Alignment:
Q  41 gtgggatgattaacactctttccttgtccccaaatactcagtatgcggcttatctcgtgttcaagatgat-aatgcatacagatttgataatgaacctat 139  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  34309771 gtgggatgattaacactctttccttgtccccaaatactcagtatgcggcttatctcgtgttcaagatgattaatgcatacggatttgataatgaacctat 34309672  T
Q  140 ggatttatccgttggtgttgaagct----atagcagcactaaatctgtctgtttggatccgaacgtgaaacatcgtgtcaggcaannnnnnngtaaatgt 235  Q
    ||||||||||||||||||||||| |    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||    
T  34309671 ggatttatccgttggtgttgaaggtggacatagcagcactaaatctgtctgtttggatccgaacgtgaaacatcgtgtcaggcaatttttttgtaaatgt 34309572  T
Q  236 tatggctggtgcccccatcgtgcgaggaggccacgtaacaaagtattaggattgcaacgtcctaatgtaagaagtgatggatg 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34309571 tatggctggtgcccccatcgtgcgaggaggccacgtaacaaagtattaggattgcaacgtcctaatgtaagaagtgatggatg 34309489  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 41 - 104
Target Start/End: Complemental strand, 45525862 - 45525799
Alignment:
Q  41 gtgggatgattaacactctttccttgtccccaaatactcagtatgcggcttatctcgtgttcaa 104  Q
    ||||||||||||||| |||| ||||||| ||||||||||||||||| |||||||||||||||||    
T  45525862 gtgggatgattaacaatcttgccttgtctccaaatactcagtatgcagcttatctcgtgttcaa 45525799  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 41 - 110
Target Start/End: Complemental strand, 35190737 - 35190668
Alignment:
Q  41 gtgggatgattaacactctttccttgtccccaaatactcagtatgcggcttatctcgtgttcaagatgat 110  Q
    |||||||||| || || ||| |||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  35190737 gtgggatgataaatacccttgccttgtccccaaatacccagtatgcggcttatcttgtgttcaagatgat 35190668  T

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Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 41 - 110
Target Start/End: Complemental strand, 45531972 - 45531903
Alignment:
Q  41 gtgggatgattaacactctttccttgtccccaaatactcagtatgcggcttatctcgtgttcaagatgat 110  Q
    ||||||||||||||| |||| ||||||||||||||||||| ||||| |||||||| |||||||| |||||    
T  45531972 gtgggatgattaacaatcttgccttgtccccaaatactcaatatgcagcttatcttgtgttcaaaatgat 45531903  T

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Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 62 - 110
Target Start/End: Complemental strand, 35476691 - 35476643
Alignment:
Q  62 ccttgtccccaaatactcagtatgcggcttatctcgtgttcaagatgat 110  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  35476691 ccttgtccccaaatactcagtatgcggcttatcttgtgttcaagatgat 35476643  T

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Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 41 - 110
Target Start/End: Complemental strand, 35147723 - 35147654
Alignment:
Q  41 gtgggatgattaacactctttccttgtccccaaatactcagtatgcggcttatctcgtgttcaagatgat 110  Q
    |||||| ||| ||||| |||  ||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  35147723 gtgggacgataaacacccttagcttgtccccaaatacccagtatgcggcttatcttgtgttcaagatgat 35147654  T

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Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 41 - 110
Target Start/End: Complemental strand, 35200306 - 35200237
Alignment:
Q  41 gtgggatgattaacactctttccttgtccccaaatactcagtatgcggcttatctcgtgttcaagatgat 110  Q
    |||||||||| ||||  ||| | ||||||||||||||||||||||| |||||||| ||||||||||||||    
T  35200306 gtgggatgataaacatgcttgcattgtccccaaatactcagtatgcagcttatcttgtgttcaagatgat 35200237  T

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Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 41 - 110
Target Start/End: Complemental strand, 35205319 - 35205250
Alignment:
Q  41 gtgggatgattaacactctttccttgtccccaaatactcagtatgcggcttatctcgtgttcaagatgat 110  Q
    ||||||||||||||| |||| | ||||| ||||||||||| ||||| |||||||| ||||||||||||||    
T  35205319 gtgggatgattaacaatcttgcattgtctccaaatactcaatatgcagcttatcttgtgttcaagatgat 35205250  T

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Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 41 - 110
Target Start/End: Original strand, 35295656 - 35295725
Alignment:
Q  41 gtgggatgattaacactctttccttgtccccaaatactcagtatgcggcttatctcgtgttcaagatgat 110  Q
    |||||||||| ||||| | | ||||||||||||||||||| ||||| |||||||| ||||||||||||||    
T  35295656 gtgggatgataaacacccctgccttgtccccaaatactcaatatgcagcttatcttgtgttcaagatgat 35295725  T

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Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 110
Target Start/End: Complemental strand, 35212361 - 35212292
Alignment:
Q  41 gtgggatgattaacactctttccttgtccccaaatactcagtatgcggcttatctcgtgttcaagatgat 110  Q
    ||||| ||||||||  |||| ||||||| ||||||||||  |||||||||||||| ||||||||||||||    
T  35212361 gtggggtgattaacgatcttgccttgtctccaaatactcgctatgcggcttatcttgtgttcaagatgat 35212292  T

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Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 110
Target Start/End: Complemental strand, 35248640 - 35248593
Alignment:
Q  63 cttgtccccaaatactcagtatgcggcttatctcgtgttcaagatgat 110  Q
    |||||||||||||||||||||||| |||||||| ||||||||| ||||    
T  35248640 cttgtccccaaatactcagtatgcagcttatcttgtgttcaaggtgat 35248593  T

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Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 108
Target Start/End: Complemental strand, 35252463 - 35252395
Alignment:
Q  40 tgtgggatgattaacactctttccttgtccccaaatactcagtatgcggcttatctcgtgttcaagatg 108  Q
    ||||| ||||| |||||  || ||||||||||||||||||||||||  || ||||| ||||||||||||    
T  35252463 tgtggtatgataaacaccattgccttgtccccaaatactcagtatgtagcgtatcttgtgttcaagatg 35252395  T

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Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 110
Target Start/End: Complemental strand, 35219454 - 35219396
Alignment:
Q  52 aacactctttccttgtccccaaatactcagtatgcggcttatctcgtgttcaagatgat 110  Q
    ||||| ||| ||||||| |||||||||| ||||||  ||||||| ||||||||||||||    
T  35219454 aacacccttaccttgtctccaaatactctgtatgcaacttatcttgtgttcaagatgat 35219396  T

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Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 110
Target Start/End: Complemental strand, 35225297 - 35225239
Alignment:
Q  52 aacactctttccttgtccccaaatactcagtatgcggcttatctcgtgttcaagatgat 110  Q
    ||||| ||| |||||||||||||||||| |||||   ||||||| ||||||||||||||    
T  35225297 aacacccttgccttgtccccaaatactcggtatgtaacttatcttgtgttcaagatgat 35225239  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 110
Target Start/End: Complemental strand, 35216304 - 35216256
Alignment:
Q  62 ccttgtccccaaatactcagtatgcggcttatctcgtgttcaagatgat 110  Q
    ||||||| |||||||||||||||||  ||||||| ||||| ||||||||    
T  35216304 ccttgtctccaaatactcagtatgcaacttatcttgtgtttaagatgat 35216256  T

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Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 33138421 - 33138482
Alignment:
Q  49 attaacactctttccttgtccccaaatactcagtatgcggcttatctcgtgttcaagatgat 110  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  33138421 attaacactctttccttgtccccaaatactcagtacgcggcttatctcgtgttcaagatgat 33138482  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 40 - 107
Target Start/End: Complemental strand, 23332161 - 23332094
Alignment:
Q  40 tgtgggatgattaacactctttccttgtccccaaatactcagtatgcggcttatctcgtgttcaagat 107  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||| ||||| |||||||| |||||    
T  23332161 tgtgggattattaacactctttcattgtccccaaatactcagtatgcagcttacctcgtgtttaagat 23332094  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 49 - 107
Target Start/End: Original strand, 19246778 - 19246836
Alignment:
Q  49 attaacactctttccttgtccccaaatactcagtatgcggcttatctcgtgttcaagat 107  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  19246778 attaagactctttccttgtccccaaatactcagtatgcagcttatctcgtcttcaagat 19246836  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 49 - 200
Target Start/End: Original strand, 899486 - 899642
Alignment:
Q  49 attaacactctttccttgtccccaaatactcagtatgcggcttatctcgtgttcaagatga-taatgcatacagatttgataatgaacctatggatttat 147  Q
    ||||||||| |||||||||||| |||||||  ||||||||||||||| ||||||||||||| | |||  ||  ||||||| ||||||||||||||  |||    
T  899486 attaacactttttccttgtcccaaaatacttggtatgcggcttatcttgtgttcaagatgattgatgattatggatttgagaatgaacctatggacctat 899585  T
Q  148 ccgttggtgttgaa----gctatagcagcactaaatctgtctgtttggatccgaacg 200  Q
    |  ||| ||| | |    || |||| ||||||||||| |||||||||||||| ||||    
T  899586 caattgatgtagtaggtggccatagtagcactaaatccgtctgtttggatccaaacg 899642  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 49 - 107
Target Start/End: Original strand, 17664375 - 17664433
Alignment:
Q  49 attaacactctttccttgtccccaaatactcagtatgcggcttatctcgtgttcaagat 107  Q
    ||||| |||||||| ||||||||||||||||||||||| ||||||||||| ||||||||    
T  17664375 attaagactctttcattgtccccaaatactcagtatgcagcttatctcgtcttcaagat 17664433  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 46 - 105
Target Start/End: Original strand, 53924101 - 53924160
Alignment:
Q  46 atgattaacactctttccttgtccccaaatactcagtatgcggcttatctcgtgttcaag 105  Q
    ||||| ||||| |||  ||||||||||||||||| ||||||||||||||| |||||||||    
T  53924101 atgataaacacccttgtcttgtccccaaatactcggtatgcggcttatcttgtgttcaag 53924160  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 110
Target Start/End: Complemental strand, 38634977 - 38634919
Alignment:
Q  52 aacactctttccttgtccccaaatactcagtatgcggcttatctcgtgttcaagatgat 110  Q
    |||||||||| |||||||| ||||||||||||||  |||||||| |||||| |||||||    
T  38634977 aacactctttacttgtcccgaaatactcagtatgtagcttatcttgtgttccagatgat 38634919  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 110
Target Start/End: Complemental strand, 38632240 - 38632183
Alignment:
Q  53 acactctttccttgtccccaaatactcagtatgcggcttatctcgtgttcaagatgat 110  Q
    |||||||| ||||||| | ||||||||||||||  |||||||| ||||||||| ||||    
T  38632240 acactcttgccttgtctcgaaatactcagtatgtagcttatcttgtgttcaagttgat 38632183  T

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