View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3212_1D_high_9 (Length: 287)
Name: NF3212_1D_high_9
Description: NF3212_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3212_1D_high_9 |
 | |
|
| [»] chr7 (3 HSPs) |
| |
|
| [»] scaffold0184 (2 HSPs) |
| | |
|
| [»] scaffold0078 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 23 - 287
Target Start/End: Complemental strand, 48398688 - 48398424
Alignment:
| Q |
23 |
aacccaaccttaacatcctcggttaacataacagcattcatcttttgctctgcataaagtggccaaaccactaaaggcaccccattaacaacactttcta |
122 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48398688 |
aacccaaccttaacatcctcagttaacataacagcattcatcttttgctctgcataaagtggccaaaccactaaaggcaccccattaacaacactttcta |
48398589 |
T |
|
| Q |
123 |
gaactgaattccaaccacaatgagttaaaaacccaccagttgacccatgggccaaaacctgtggttgtggggcccaagatgacacaactagaccccttcc |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48398588 |
gaactgaattccaaccacaatgagttaaaaacccaccagttgacccatgtgccaaaacctgtggttgtggggcccaagatgacacaactagaccccttcc |
48398489 |
T |
|
| Q |
223 |
tttagttctctccaaaaatccatttggtaaaaaatcaaaaggatcagaatgtgtttcagcactga |
287 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
48398488 |
tttagttctctccaaaaatccatttggtaaaaaatcaaatggatcagaatctgtttcagcactga |
48398424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 97 - 165
Target Start/End: Complemental strand, 16490993 - 16490925
Alignment:
| Q |
97 |
aggcaccccattaacaacactttctagaactgaattccaaccacaatgagttaaaaacccaccagttga |
165 |
Q |
| |
|
|||||| |||| ||||||||||| || ||||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
16490993 |
aggcacaccatagacaacactttcaagtactgaattccaaccacagtgagataaaaacccaccagttga |
16490925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 165
Target Start/End: Complemental strand, 41562655 - 41562617
Alignment:
| Q |
127 |
tgaattccaaccacaatgagttaaaaacccaccagttga |
165 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
41562655 |
tgaattccaaccacaatgagataaaaatccaccagttga |
41562617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 52 - 264
Target Start/End: Original strand, 10208896 - 10209108
Alignment:
| Q |
52 |
aacagcattcatcttttgctctgcataaagtggccaaaccactaaaggcaccccattaacaacactttctagaactgaattccaaccacaatgagttaaa |
151 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||| | | |||||||| ||||| || ||||| || ||| ||||||||||||||||||| | | | |
|
|
| T |
10208896 |
aacagcattcatcttttgctcagcatagagtggccatgcaatcaaaggcacaccattcaccacactctcaagagttgaattccaaccacaatgactcaca |
10208995 |
T |
|
| Q |
152 |
aacccaccagttgacccatgggccaaaacctgtggttgtggggcccaagatgacacaactagaccccttcctttagttctctccaaaaatccatttggta |
251 |
Q |
| |
|
||||| ||| |||| ||| |||||| |||| ||||||||||||| ||| | |||| |||| | |||||||| ||||| ||| |||||||||| |
|
|
| T |
10208996 |
aaccctccaattgagatatgactcaaaacttgtgcttgtggggcccaatatgggagcactaaacccttccctttagtcctctctgtaaaaccatttggta |
10209095 |
T |
|
| Q |
252 |
aaaaatcaaaagg |
264 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
10209096 |
aaaattcaaaagg |
10209108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 52 - 264
Target Start/End: Original strand, 10201823 - 10202035
Alignment:
| Q |
52 |
aacagcattcatcttttgctctgcataaagtggccaaaccactaaaggcaccccattaacaacactttctagaactgaattccaaccacaatgagttaaa |
151 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||| | | |||||||| ||||| || ||||| || ||| ||||||||||||||||||| | | | |
|
|
| T |
10201823 |
aacagcattcatcttttgctcagcatagagtggccatgcaatcaaaggcacaccattcaccacactctcaagagttgaattccaaccacaatgactcaca |
10201922 |
T |
|
| Q |
152 |
aacccaccagttgacccatgggccaaaacctgtggttgtggggcccaagatgacacaactagaccccttcctttagttctctccaaaaatccatttggta |
251 |
Q |
| |
|
||||| ||| |||| ||| |||||| |||| ||||||||||||| ||| | |||| |||| | |||||||| ||||| | | |||||||||| |
|
|
| T |
10201923 |
aaccctccaattgagatatgactcaaaacttgtgcttgtggggcccaatatgggagcactaaacccttccctttagtcctctctatgtaaccatttggta |
10202022 |
T |
|
| Q |
252 |
aaaaatcaaaagg |
264 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
10202023 |
aaaattcaaaagg |
10202035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 165
Target Start/End: Original strand, 33005117 - 33005155
Alignment:
| Q |
127 |
tgaattccaaccacaatgagttaaaaacccaccagttga |
165 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
33005117 |
tgaattccaaccacaatgtgttaaaaatccaccagttga |
33005155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 104 - 165
Target Start/End: Original strand, 844998 - 845059
Alignment:
| Q |
104 |
ccattaacaacactttctagaactgaattccaaccacaatgagttaaaaacccaccagttga |
165 |
Q |
| |
|
||||| ||||||||||| || |||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
844998 |
ccatttacaacactttcaagtgttgaattccaaccacaatgagttaaaaacccaccaattga |
845059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 104 - 165
Target Start/End: Original strand, 870282 - 870343
Alignment:
| Q |
104 |
ccattaacaacactttctagaactgaattccaaccacaatgagttaaaaacccaccagttga |
165 |
Q |
| |
|
||||| ||||||||||| || |||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
870282 |
ccatttacaacactttcaagtgttgaattccaaccacaatgagttaaaaacccaccaattga |
870343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 171
Target Start/End: Original strand, 8294449 - 8294493
Alignment:
| Q |
127 |
tgaattccaaccacaatgagttaaaaacccaccagttgacccatg |
171 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||| |||| ||||| |
|
|
| T |
8294449 |
tgaactccaaccacaatgacttaaaaacccaccaattgatccatg |
8294493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: scaffold0184
Description:
Target: scaffold0184; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 113 - 257
Target Start/End: Original strand, 11635 - 11779
Alignment:
| Q |
113 |
acactttctagaactgaattccaaccacaatgagttaaaaacccaccagttgacccatgggccaaaacctgtggttgtggggcccaagatgacacaacta |
212 |
Q |
| |
|
||||| || |||||||||||||||||||||||||| ||||| ||||| |||||||||| ||||| |||| ||| || |||||| | ||||||| |
|
|
| T |
11635 |
acactctcaagaactgaattccaaccacaatgagtcaaaaatgcaccaattgacccatgactcaaaatttgtgtttgaggtgcccaattaggtacaacta |
11734 |
T |
|
| Q |
213 |
gaccccttcctttagttctctccaaaaatccatttggtaaaaaat |
257 |
Q |
| |
|
|| ||||||||||||||| ||||| || ||||||||||||| |
|
|
| T |
11735 |
atccttgtcctttagttctctctaaaaacccttttggtaaaaaat |
11779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 160
Target Start/End: Original strand, 15197 - 15233
Alignment:
| Q |
124 |
aactgaattccaaccacaatgagttaaaaacccacca |
160 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
15197 |
aactgaattccaaccacaatgacttaaaaatccacca |
15233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0078
Description:
Target: scaffold0078; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 160
Target Start/End: Complemental strand, 57647 - 57611
Alignment:
| Q |
124 |
aactgaattccaaccacaatgagttaaaaacccacca |
160 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
57647 |
aactgaattccaaccacaatgacttaaaaatccacca |
57611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University