View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3212_1D_low_11 (Length: 285)
Name: NF3212_1D_low_11
Description: NF3212_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3212_1D_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 13 - 278
Target Start/End: Original strand, 36198304 - 36198569
Alignment:
| Q |
13 |
atcaaattgagagactgtgaatccattctcctattcaatcagtttgtcgactattttatgctctcgcgagaagccactggtaatcattccattgacagtt |
112 |
Q |
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| T |
36198304 |
atcaaattgagagactgtgaatccattctcctattcaatcagttcgtcgactattttatgctctcgcgagaagccactggtaatcattccatcgacagtt |
36198403 |
T |
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| Q |
113 |
ttatcgtggacgttgaatatgctgctggtcgtaatcacgtcacatctcttagcattcccaatctcgcaaaatgggttaaccttgttgttcaacgcaaagt |
212 |
Q |
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| T |
36198404 |
ttatcgtggacgttgaatatgctgctagtcgtaatcacgtcacatctcttagcattcccaatctcgcaaaatgggttaaccttgttgttcaacgcaaagt |
36198503 |
T |
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| Q |
213 |
taagcatcttcatctccttctcaatttgctcaatgatccaattccccccggttttctactgcccaa |
278 |
Q |
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| T |
36198504 |
taagaatcttcatctccttctcaatttgctcaatgatccaattccccccggttttctactccccaa |
36198569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 32 - 96
Target Start/End: Complemental strand, 694704 - 694640
Alignment:
| Q |
32 |
aatccattctcctattcaatcagtttgtcgactattttatgctctcgcgagaagccactggtaat |
96 |
Q |
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| T |
694704 |
aatccattctccgattcaatcagtttgtctactctgttatgctctcgcgagaagccgctggtaat |
694640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 227
Target Start/End: Complemental strand, 1012931 - 1012871
Alignment:
| Q |
167 |
ttcccaatctcgcaaaatgggttaaccttgttgttcaacgcaaagttaagcatcttcatct |
227 |
Q |
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| T |
1012931 |
ttcccaatgtcactaaatggatcaaccttgttgttcaacgcaaactcaaccatcttcatct |
1012871 |
T |
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