View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3212_1D_low_15 (Length: 266)
Name: NF3212_1D_low_15
Description: NF3212_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3212_1D_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 5 - 129
Target Start/End: Original strand, 41826551 - 41826675
Alignment:
| Q |
5 |
gagatgaagaaaatacttcctttactgattatatacgaaattgtgcgaagcacatagtaggcatatacaaattcctcagattgattccaagcaagtaaag |
104 |
Q |
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| T |
41826551 |
gagatgcagaaaatacttcctttactgattatatacgaaattgtgcgaagcacatagtatgcatatacaaattcctcagattgattccaagcaagtaaag |
41826650 |
T |
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| Q |
105 |
ctacaccaatcaacaagaatacagt |
129 |
Q |
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| T |
41826651 |
ctacaccaatcaacaagaatacagt |
41826675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 41819911 - 41820013
Alignment:
| Q |
12 |
agaaaatacttcctttactgattatatacgaaattgtgcgaagcacatagtaggcatatacaaattcctcagattgattccaagcaagtaaagctacacc |
111 |
Q |
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|||| |||||||||| |||||| |||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |
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| T |
41819911 |
agaagatacttccttgactgataatatgcgaaaatgtgcgaagcacatagtaggcatatacaaattccttagattgattccaagcaagtaaagctacaac |
41820010 |
T |
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| Q |
112 |
aat |
114 |
Q |
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||| |
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| T |
41820011 |
aat |
41820013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 167 - 239
Target Start/End: Original strand, 41826713 - 41826785
Alignment:
| Q |
167 |
tcatacgtaataatgagagtttacactatcaatcaatcataaccgttagatcattgaaaacgttcaacttttt |
239 |
Q |
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| T |
41826713 |
tcatacgtaataatgagagtttacactatcaatcaatcataatcgttagatcattgaaaacattcaacttttt |
41826785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 79 - 125
Target Start/End: Original strand, 1148466 - 1148512
Alignment:
| Q |
79 |
ctcagattgattccaagcaagtaaagctacaccaatcaacaagaata |
125 |
Q |
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| T |
1148466 |
ctcagattgattccaagcaagtaaagctacaccaatcaacaagaata |
1148512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 84 - 126
Target Start/End: Complemental strand, 2830543 - 2830501
Alignment:
| Q |
84 |
attgattccaagcaagtaaagctacaccaatcaacaagaatac |
126 |
Q |
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| T |
2830543 |
attgattccaagcaagtaaagctacaccaatcaacaagaatac |
2830501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 129
Target Start/End: Complemental strand, 40334729 - 40334692
Alignment:
| Q |
92 |
caagcaagtaaagctacaccaatcaacaagaatacagt |
129 |
Q |
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| T |
40334729 |
caagcaagtaaagctacaccaatcaacaagaatacagt |
40334692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 89 - 125
Target Start/End: Original strand, 27532404 - 27532440
Alignment:
| Q |
89 |
ttccaagcaagtaaagctacaccaatcaacaagaata |
125 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
27532404 |
ttccaagcaagtaaagctacaccaatcaacaagaata |
27532440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 225
Target Start/End: Complemental strand, 4076104 - 4076065
Alignment:
| Q |
186 |
tttacactatcaatcaatcataaccgttagatcattgaaa |
225 |
Q |
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| T |
4076104 |
tttacactatcaatcaatcataatcgttagatcattgaaa |
4076065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 226
Target Start/End: Original strand, 33657402 - 33657439
Alignment:
| Q |
189 |
acactatcaatcaatcataaccgttagatcattgaaaa |
226 |
Q |
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|||||||||||||||||||||||| | ||||||||||| |
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| T |
33657402 |
acactatcaatcaatcataaccgtcaaatcattgaaaa |
33657439 |
T |
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