View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3212_1D_low_17 (Length: 259)
Name: NF3212_1D_low_17
Description: NF3212_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3212_1D_low_17 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 41826293 - 41826551
Alignment:
| Q |
1 |
tcaacacaaaacttaatgaacaaagattaccacaaaaatgtagttttgaggaagaaaacgagccaagacgatcccaacaacatgtgaagccgaaaagaga |
100 |
Q |
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| T |
41826293 |
tcaacacaaaacttaatgaacaaagattaccacaaaaatgtagttttgaggaagaaatcgagccaagacgttcccaacaacatgtgaagccgaaaagaga |
41826392 |
T |
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| Q |
101 |
ccagtgatccaaccaaatactgctgcccctttgttttcattgacaacatctgcctgacagaggaaagatatcaatatgtaaataaaattgtttaccatct |
200 |
Q |
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| T |
41826393 |
ccagtgatccaaccaaatactgctgcccttttgttttcattgacaacatctgcctgacagaggaaagatatcaatatgtaaataaaattgtttaccatct |
41826492 |
T |
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| Q |
201 |
tctttttcttttcaaaatttagttaaattaagataaaaatctcaccacatacgcgacag |
259 |
Q |
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| T |
41826493 |
tctttttcttttcaaaatttagttaaattaagataaaaatctcaccacatacgcgacag |
41826551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 3 - 259
Target Start/End: Original strand, 41819653 - 41819904
Alignment:
| Q |
3 |
aacacaaaacttaatgaacaaagattaccacaaaaatgtagttttgaggaagaaaacgagccaagacgatcccaacaacatgtgaagccgaaaagagacc |
102 |
Q |
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| T |
41819653 |
aacacaaaactcaatgaacaaagattaccacaaaaatgtagttttgaggaagaaaccgagcaaagacattcgcaataacatgtgcagcagaagagagacc |
41819752 |
T |
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| Q |
103 |
agtgatccaaccaaatactgctgcccctttgttttcattgacaacatctgcctgacagag-gaaagatatcaatatgtaaataaaattgtttaccatctt |
201 |
Q |
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| T |
41819753 |
agtgatccaactaaatactgctactcttttgctttcatgaacaacatctgcctaaaagagaggaag-tatgaatatgtaaataaattttttaacaatttt |
41819851 |
T |
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| Q |
202 |
ctttttcttttcaaaatttagttaaattaagataaaaatctcaccacatacgcgacag |
259 |
Q |
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| T |
41819852 |
c---ttcttttgaaaatttagtt-ggttaaga-aaaaacctcaccacatacgcgacag |
41819904 |
T |
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