View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3212_1D_low_19 (Length: 242)
Name: NF3212_1D_low_19
Description: NF3212_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3212_1D_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 17 - 236
Target Start/End: Complemental strand, 50756571 - 50756352
Alignment:
| Q |
17 |
ggacatcacctatattaatacatagagcttctgggtcagggttaacaggaatccagagaccatgttgaagagaaatttgaagaccagaaacgtccttaga |
116 |
Q |
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| T |
50756571 |
ggacatcacctatattaatacatagagcttctgggtcagggttaacaggaatccagagaccatgttgaagagaaatttgaagaccagaaacgtcattaga |
50756472 |
T |
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| Q |
117 |
tctaagaatggtcaagatctgagggtcagaatgctccccaaagccaacattgttggaatgtgacctgtccttgttaagtgtaggtgggtagtgattgagc |
216 |
Q |
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| T |
50756471 |
tctaagaatggtcaagatctgagggtcagaatgctccccaaagccaacattgttggaatgtgacttgtccttgttaagtgtaggtgggtagtgattgagc |
50756372 |
T |
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| Q |
217 |
ctaagaactgagtcactatc |
236 |
Q |
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|||||||||||||||||||| |
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| T |
50756371 |
ctaagaactgagtcactatc |
50756352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 17 - 126
Target Start/End: Original strand, 4320308 - 4320417
Alignment:
| Q |
17 |
ggacatcacctatattaatacatagagcttctgggtcagggttaacaggaatccagagaccatgttgaagagaaatttgaagaccagaaacgtccttaga |
116 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
4320308 |
ggacatcacctatattaacacatagagcttctgggtcagggttaacaggaatccagagaccatgttgaagagaaatttgaagaccagaaacgtcattaga |
4320407 |
T |
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| Q |
117 |
tctaagaatg |
126 |
Q |
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| T |
4320408 |
tctaagaatg |
4320417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 75 - 175
Target Start/End: Original strand, 12610391 - 12610491
Alignment:
| Q |
75 |
accatgttgaagagaaatttgaagaccagaaacgtccttagatctaagaatggtcaagatctgagggtcagaatgctccccaaagccaacattgttggaa |
174 |
Q |
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|||||||||||| |||||||| ||||||| ||| || || |||||||| || || | ||||||||||||||||| || ||||||||||| |||| |||| |
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| T |
12610391 |
accatgttgaagtgaaatttggagaccagcaacatcgttggatctaaggatagtaagaatctgagggtcagaatgttctccaaagccaacgttgtaggaa |
12610490 |
T |
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| Q |
175 |
t |
175 |
Q |
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| T |
12610491 |
t |
12610491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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