View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3212_1D_low_20 (Length: 240)

Name: NF3212_1D_low_20
Description: NF3212_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3212_1D_low_20
NF3212_1D_low_20
[»] chr7 (2 HSPs)
chr7 (161-240)||(6703330-6703409)
chr7 (10-71)||(6703178-6703239)
[»] chr2 (1 HSPs)
chr2 (183-223)||(8731061-8731101)


Alignment Details
Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 161 - 240
Target Start/End: Original strand, 6703330 - 6703409
Alignment:
Q  161 gttattcatcattatagtcgattttctaggacattttatcaagaatattatgatagagtacctagtgttatatggttgga 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6703330 gttattcatcattatagtcgattttctaggacattttatcaagaatattatgatagagtacctagtgttatatggttgga 6703409  T

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Target: chr7; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 10 - 71
Target Start/End: Original strand, 6703178 - 6703239
Alignment:
Q  10 atggacatcagaatttgtgtttatgccattgatcatattaatttggtatgatattcttccaa 71  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6703178 atggacatcagaatttgtgtttatgccattgatcatattaatttggtatgatattcttccaa 6703239  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 223
Target Start/End: Original strand, 8731061 - 8731101
Alignment:
Q  183 tttctaggacattttatcaagaatattatgatagagtacct 223  Q
    ||||||||| ||||||||||||||||  |||||||||||||    
T  8731061 tttctaggaaattttatcaagaatatcttgatagagtacct 8731101  T

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