View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3212_1D_low_21 (Length: 238)
Name: NF3212_1D_low_21
Description: NF3212_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3212_1D_low_21 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-125; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 31684434 - 31684197
Alignment:
| Q |
1 |
gatcaaatacaatgcactccatttgtgggaatgatttggcaagagtttttgccatggtccccgtacctcctccaacatcaaccaatgactcgacttcatt |
100 |
Q |
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| T |
31684434 |
gatcaaatacaatgcactccatttgtgggaatgatttggcaagagtttttgccatggtccctgtacctcctccaacatcaaccaatgactcgacttcatt |
31684335 |
T |
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| Q |
101 |
gaacactcccttgcacttctcaaccaacaaatcggaaactaatcgagtttcttttgccattgatttgttaaatgagttgttaattttggagtcacgtgca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
31684334 |
gaacactcccttgcacttctcaaccaacaaatcggaaactaatcgagtttcttttgccattgattcgttaaatgagttgttaattttggagtcacgtgca |
31684235 |
T |
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| Q |
201 |
agataatcccaaaacgacatcccatgtgttgtttcaaa |
238 |
Q |
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| T |
31684234 |
agataatccctaaacgacatcccatgtgttgtttcaaa |
31684197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 31711407 - 31711179
Alignment:
| Q |
1 |
gatcaaatacaatgcactccatttgtgggaatgatttggcaagagtttttgccatggtccccgtacctcctccaacatcaaccaatgactcgacttcatt |
100 |
Q |
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| T |
31711407 |
gatcaaacacaatgcactccatttgtgggaatgatttgacaagagtctttgccatggtccccgtacctcctccaacatcaaccaatgactcaacttcatt |
31711308 |
T |
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| Q |
101 |
gaacactcccttgcacttctcaaccaacaaatcggaaactaatcgagtttcttttgccattgatttgttaaatgagttgttaattttggagtcacgtgca |
200 |
Q |
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| T |
31711307 |
gaacactcccttgcatttctcaaccaacaaatcagaaactaatcgagtatcatttgccattgactcgttaaataagttgttaatttcggagtcacgtgca |
31711208 |
T |
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| Q |
201 |
agataatcccaaaacgacatcccatgtgt |
229 |
Q |
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| T |
31711207 |
gcatactcccatgttgacatcccatgtgt |
31711179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 31734813 - 31734576
Alignment:
| Q |
1 |
gatcaaatacaatgcactccatttgtgggaatgatttggcaagagtttttgccatggtccccgtacctcctccaacatcaaccaatgactcgacttcatt |
100 |
Q |
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| T |
31734813 |
gatcaaacacaatgcactccatttgtgggaatgatttggcaaaagtctttgccatagtccctgttcctcctccaacatcaaccaatgactcaaattcatt |
31734714 |
T |
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| Q |
101 |
gaacactcccttgcacttctcaaccaacaaatcggaaactaatcgagtttcttttgccattgatttgttaaatgagttgttaattttggagtcacgtgca |
200 |
Q |
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| T |
31734713 |
gaacactcccttgcacttctcaaccaacaaattggaaactaattgagcatcatttgccattgactcattaaataagttgttaaatttggagtcacacgca |
31734614 |
T |
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| Q |
201 |
agataatcccaaaacgacatcccatgtgttgtttcaaa |
238 |
Q |
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| T |
31734613 |
gcatattcccataacaacatcccgtgtgtcgtttcaaa |
31734576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 31702973 - 31702736
Alignment:
| Q |
1 |
gatcaaatacaatgcactccatttgtgggaatgatttggcaagagtttttgccatggtccccgtacctcctccaacatcaaccaatgactcgacttcatt |
100 |
Q |
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||||||||||| | |||||||||||||||||||||| ||||| | |||||||||||||| || || ||||||||||||||||||||||| | |||| |
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| T |
31702973 |
gatcaaatacactaaactccatttgtgggaatgatttagcaagggcctttgccatggtccctgtgccacctccaacatcaaccaatgactccaacccatt |
31702874 |
T |
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| Q |
101 |
gaacactcccttgcacttctcaaccaacaaatcggaaactaatcgagtttcttttgccattgatttgttaaatgagttgttaattttggagtcacgtgca |
200 |
Q |
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| T |
31702873 |
gaatactcccctgcacttctcaatcaacaaattggtcactaatcgagtatcacttgccatggactcattgaataagttgctaaatttggagtcacacgca |
31702774 |
T |
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| Q |
201 |
agataatcccaaaacgacatcccatgtgttgtttcaaa |
238 |
Q |
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| T |
31702773 |
acatattcccataacaacatcctgtgtgtcgtttcaaa |
31702736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 31714376 - 31714268
Alignment:
| Q |
1 |
gatcaaatacaatgcactccatttgtgggaatgatttggcaagagtttttgccatggtccccgtacctcctccaacatcaaccaatgactcgacttcatt |
100 |
Q |
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||||||| ||| ||||||| | ||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||| || | | |||| |
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| T |
31714376 |
gatcaaacacagtgcactctaattgtgggaatgatttggcaagagcctttgccatggtccctgtgcctcctccaacatcaaccaatgattccaatccatt |
31714277 |
T |
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| Q |
101 |
gaacactcc |
109 |
Q |
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| T |
31714276 |
gaacactcc |
31714268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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