View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3212_1D_low_22 (Length: 237)
Name: NF3212_1D_low_22
Description: NF3212_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3212_1D_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 5e-86; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 41 - 213
Target Start/End: Original strand, 2546754 - 2546926
Alignment:
| Q |
41 |
gctagcacgaaattaatgctactagaaatagtgaaataacaatgggggttgaattcttccatcagggtgaattcttcgagtaaaggaaaacaatcaacaa |
140 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
2546754 |
gctagcatgaaattaatgctactagaaatagtgaaataacaatgggggttgaattcttccatcagggtgaattcttcgagtaaaggaaaacaatcagcaa |
2546853 |
T |
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| Q |
141 |
tgaagaataaatcattcttgtgtacacaagtaatctcagaacaattgagagtcgggaaattcttcaaagaagt |
213 |
Q |
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| T |
2546854 |
tgaagaataaatcattcttgtgtacacaagtaatctcagaacaattgagagtcgggaaattcttcaaataagt |
2546926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 93 - 160
Target Start/End: Original strand, 2547206 - 2547273
Alignment:
| Q |
93 |
attcttccatcagggtgaattcttcgagtaaaggaaaacaatcaacaatgaagaataaatcattcttg |
160 |
Q |
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| T |
2547206 |
attcttccattagggtgagttcttcaagtaaagggaaacaatcagcaatgaagaataaatcattcttg |
2547273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 160
Target Start/End: Complemental strand, 2621530 - 2621482
Alignment:
| Q |
112 |
ttcttcgagtaaaggaaaacaatcaacaatgaagaataaatcattcttg |
160 |
Q |
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| T |
2621530 |
ttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttg |
2621482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 167
Target Start/End: Complemental strand, 5106681 - 5106626
Alignment:
| Q |
112 |
ttcttcgagtaaaggaaaacaatcaacaatgaagaataaatcattcttgtgtacac |
167 |
Q |
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| T |
5106681 |
ttcttcgagtaaagggaaacaatcagcaatgaagaagagatcactcttgtctacac |
5106626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 162
Target Start/End: Complemental strand, 2368030 - 2367980
Alignment:
| Q |
112 |
ttcttcgagtaaaggaaaacaatcaacaatgaagaataaatcattcttgtg |
162 |
Q |
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||||||||||||||| ||||||||| |||||||||| | |||| ||||||| |
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| T |
2368030 |
ttcttcgagtaaagggaaacaatcagcaatgaagaagagatcactcttgtg |
2367980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 162
Target Start/End: Original strand, 2518914 - 2518964
Alignment:
| Q |
112 |
ttcttcgagtaaaggaaaacaatcaacaatgaagaataaatcattcttgtg |
162 |
Q |
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| T |
2518914 |
ttctttgagtaaagggaaacaatcagcaatgaagaagagatcattcttgtg |
2518964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 161
Target Start/End: Complemental strand, 2391386 - 2391337
Alignment:
| Q |
112 |
ttcttcgagtaaaggaaaacaatcaacaatgaagaataaatcattcttgt |
161 |
Q |
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||||||||||||||| || ||||||||||||||||| | ||| ||||||| |
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| T |
2391386 |
ttcttcgagtaaagggaagcaatcaacaatgaagaagatatccttcttgt |
2391337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 161
Target Start/End: Original strand, 2471729 - 2471786
Alignment:
| Q |
104 |
agggtgaattcttcgagtaaaggaaaacaatcaacaatgaagaataaatcattcttgt |
161 |
Q |
| |
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||||||| ||||||||||||||||||||||||| | || ||||| | || |||||||| |
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| T |
2471729 |
agggtgagttcttcgagtaaaggaaaacaatcagctatcaagaagagatgattcttgt |
2471786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 161
Target Start/End: Original strand, 5035303 - 5035352
Alignment:
| Q |
112 |
ttcttcgagtaaaggaaaacaatcaacaatgaagaataaatcattcttgt |
161 |
Q |
| |
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||||||||||||||| ||||||||| |||| ||||| | ||||||||||| |
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| T |
5035303 |
ttcttcgagtaaagggaaacaatcagcaatcaagaaaagatcattcttgt |
5035352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 184
Target Start/End: Complemental strand, 2381758 - 2381686
Alignment:
| Q |
112 |
ttcttcgagtaaaggaaaacaatcaacaatgaagaataaatcattcttgtgtacacaagtaatctcagaacaa |
184 |
Q |
| |
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||||||||||||||| || ||||| |||||||| || ||||| ||||||| | |||||||| ||||||||| |
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| T |
2381758 |
ttcttcgagtaaagggaagcaatcgacaatgaataagaaatccttcttgttgatccaagtaatttcagaacaa |
2381686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 161
Target Start/End: Original strand, 2467224 - 2467272
Alignment:
| Q |
113 |
tcttcgagtaaaggaaaacaatcaacaatgaagaataaatcattcttgt |
161 |
Q |
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|||||||||||||| ||||||||| |||||||||| | ||| ||||||| |
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| T |
2467224 |
tcttcgagtaaagggaaacaatcagcaatgaagaaaagatcgttcttgt |
2467272 |
T |
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