View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3212_1D_low_23 (Length: 237)
Name: NF3212_1D_low_23
Description: NF3212_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3212_1D_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 6 - 165
Target Start/End: Complemental strand, 4864143 - 4863989
Alignment:
| Q |
6 |
acaatggtcttaaagaagcactgagttattaaataaaacatgtatttgttagtttaaaaaataaattcaagaaatccaaagtacattttaggttctacgt |
105 |
Q |
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| T |
4864143 |
acaatggtcttaaagaagcactgagttattaaataaaacatgtatttgttagtttaaaaaataaattcaagaaatccaaattacattttaggttctacgt |
4864044 |
T |
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| Q |
106 |
aaatttgtataaaatctcacatgcaacgcaacggtatatagcttacatctcaaggtcaca |
165 |
Q |
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| T |
4864043 |
aaatttgtataaaatcttacat-----gcaacggtatatagcttacatatcaaggtcaca |
4863989 |
T |
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Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 175 - 227
Target Start/End: Original strand, 35006189 - 35006241
Alignment:
| Q |
175 |
cgttcactgagtgctttaaagaaattcctctagtttacagctcttttgatgtc |
227 |
Q |
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| T |
35006189 |
cgttcactgagtgctttaaagaaattcctctagtttacagctcttttgatgtc |
35006241 |
T |
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