View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3212_1D_low_26 (Length: 221)
Name: NF3212_1D_low_26
Description: NF3212_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3212_1D_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 169; Significance: 8e-91; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 7 - 204
Target Start/End: Original strand, 31043052 - 31043249
Alignment:
| Q |
7 |
gtagatctgatgctacaaatatctttgattgtgacttctatatccatcaaagatagttttattattttgacaagtgtaannnnnnngattaaattatgtc |
106 |
Q |
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| T |
31043052 |
gtagatctgatgctacaaatatctttgattgtgacttctatatccatcaaagatagttttattattttgacaagtgtaatttttttgattaaattatgtc |
31043151 |
T |
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| Q |
107 |
acaagacatcatttttaaaacaaattaatttatgcatataaaggtgatcccgagtataaagttataagatctgcaaatctatatagcttaagcttatg |
204 |
Q |
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| T |
31043152 |
acaagacatcatttttaaaacaaattaatttatgcatataagagtgatcccgagtataaagttataagatctgcaaatctatatagcttaagcttatg |
31043249 |
T |
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Target: chr3; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 7 - 50
Target Start/End: Original strand, 31046149 - 31046192
Alignment:
| Q |
7 |
gtagatctgatgctacaaatatctttgattgtgacttctatatc |
50 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31046149 |
gtagatctgatgctacaaatatctttgattgtgacttctatatc |
31046192 |
T |
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