View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3212_1D_low_28 (Length: 212)
Name: NF3212_1D_low_28
Description: NF3212_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3212_1D_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 133; Significance: 2e-69; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 22 - 158
Target Start/End: Complemental strand, 39299715 - 39299579
Alignment:
| Q |
22 |
accaaagtggtttctggaacaccacatgtgaaagaaatgaacagaggaatgggaacaggacaagttgtggccgagaaaggaagaaaaacagaggatttag |
121 |
Q |
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| T |
39299715 |
accaaagtggtttctggaacaccacatgtgaaagaaatgaacagaggaatgggaacaggacaagttgtggcagagaaaggaagaaaaacagaggatttag |
39299616 |
T |
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| Q |
122 |
gaacaagaggtgaaggaaaagtacctggtgctggaaa |
158 |
Q |
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| T |
39299615 |
gaacaagaggtgaaggaaaagtacctggtgctggaaa |
39299579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 155 - 199
Target Start/End: Original strand, 39076802 - 39076846
Alignment:
| Q |
155 |
gaaacgcaggcgaattaaccataaacccggttctattcatatcag |
199 |
Q |
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| T |
39076802 |
gaaacgcaggcgaattaaccataaacccggttctattcatatcag |
39076846 |
T |
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