View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3212_1D_low_5 (Length: 370)
Name: NF3212_1D_low_5
Description: NF3212_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3212_1D_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 2 - 345
Target Start/End: Complemental strand, 8000012 - 7999669
Alignment:
| Q |
2 |
taaaggtattaggaccatatctatgagtggtatctttgtccaaattctttggcaagttgataatttcgatggctccaaaaggacatttctacagcaatat |
101 |
Q |
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| T |
8000012 |
taaaggtattaggaccatatctatgagtggtatctttgtccaaattttttggcaagttgataatttcgatggctccaaaaggacatttctacagcaatat |
7999913 |
T |
|
| Q |
102 |
catcatcacataaaccaaacccattattcattattaagtattaacaaaagcgagcatctttaaaaaagttaatgaatagaataataataccttaacacaa |
201 |
Q |
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| T |
7999912 |
catcatcacataaaccaaacccattattcattattaagtattaacaaaagcgagcatctttaaaaaagtgaatgaatagaataataataccttaacacaa |
7999813 |
T |
|
| Q |
202 |
ataccgcatccaatgcacaattcctcggaaatgtaagcaatcttggacgcagaagtaacctcaacacataattttccggttccgacgacaggacaactct |
301 |
Q |
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| T |
7999812 |
ataccgcatccaatgcacaattcctcggaaatgtaagcaatcttggacgcagaagtaacctcaacacataattttccggttccgacgacaggacaactct |
7999713 |
T |
|
| Q |
302 |
tcttgcactcttgacggcactttttcggtttgcatttgtcgttg |
345 |
Q |
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| T |
7999712 |
tcttgcactcttgacgacactttttcggtttgcatttgtcgttg |
7999669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 2 - 345
Target Start/End: Original strand, 7908551 - 7908907
Alignment:
| Q |
2 |
taaaggtattaggaccatatctatgagtggtatctttgtccaaattctttggcaagttgataatttcgatggctccaaaaggacatttctacagcaatat |
101 |
Q |
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| T |
7908551 |
taaaggtattaggaccatatctatgagtgatatctttgttaaaatccttagt---gttgataatttcgatggctccaaaaggacatctctgcagcaaaat |
7908647 |
T |
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| Q |
102 |
catcatcacataaaccaaacccattattcattattaagtattaacaaaagcgagcatctttaaa----------------aaagttaatgaata--gaat |
183 |
Q |
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| T |
7908648 |
caccatcacataaac-aaacccattattg-ttattat-tattaacaaaagcgagcatctttaaataaaataaaaaataaaaaagtgaatgaataatgaat |
7908744 |
T |
|
| Q |
184 |
aa-taataccttaacacaaataccgcatccaatgcacaattcctcggaaatgtaagcaatcttggacgcagaagtaacctcaacacataattttccggtt |
282 |
Q |
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|| ||||||||||||||| |||| ||||||||||||||||||||| || |||||||||||||||||| ||| |||||||||||||||| ||||||| || |
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| T |
7908745 |
aaataataccttaacacacatacggcatccaatgcacaattcctcagatatgtaagcaatcttggactcaggagtaacctcaacacatgattttccaatt |
7908844 |
T |
|
| Q |
283 |
ccgacgacaggacaactcttcttgcactcttgacggcactttttcggtttgcatttgtcgttg |
345 |
Q |
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| T |
7908845 |
atgacgacaggacaaatcatctggcactcttgatgacactttagcggtctgcatttgtcgttg |
7908907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 2 - 117
Target Start/End: Complemental strand, 51515099 - 51514984
Alignment:
| Q |
2 |
taaaggtattaggaccatatctatgagtggtatctttgtccaaattctttggcaagttgataatttcgatggctccaaaaggacatttctacagcaatat |
101 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||| ||||||||||||||||||||||||| |
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| T |
51515099 |
taaaagtattaggaccgtatctatgagtggtatctttgtccaaatcctttggcaagttgataatttggatagcttcaaaaggacatttctacagcaatat |
51515000 |
T |
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| Q |
102 |
catcatcacataaacc |
117 |
Q |
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|||||||||||||||| |
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| T |
51514999 |
catcatcacataaacc |
51514984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 184 - 278
Target Start/End: Complemental strand, 51514924 - 51514830
Alignment:
| Q |
184 |
aataataccttaacacaaataccgcatccaatgcacaattcctcggaaatgtaagcaatcttggacgcagaagtaacctcaacacataattttcc |
278 |
Q |
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|
||||||||||||||||| ||||| |||||||||||||||||||| || ||||||||||| || || ||||| |||||||||||||||||| |||| |
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| T |
51514924 |
aataataccttaacacagataccacatccaatgcacaattcctcagatatgtaagcaattttcgaagcagaggtaacctcaacacataatcttcc |
51514830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 277 - 345
Target Start/End: Complemental strand, 51514717 - 51514649
Alignment:
| Q |
277 |
ccggttccgacgacaggacaactcttcttgcactcttgacggcactttttcggtttgcatttgtcgttg |
345 |
Q |
| |
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| T |
51514717 |
ccggttctgacgacaggacaactcttcttacattcttgacgacactttttgggtttgcatctgtcgttg |
51514649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 187 - 278
Target Start/End: Original strand, 1304583 - 1304674
Alignment:
| Q |
187 |
aataccttaacacaaataccgcatccaatgcacaattcctcggaaatgtaagcaatcttggacgcagaagtaacctcaacacataattttcc |
278 |
Q |
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|||||||||||||||||||| |||||| |||||||||||||||| | |||||||||||| || |||||| ||||||||| ||| |||||||| |
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| T |
1304583 |
aataccttaacacaaataccacatccattgcacaattcctcggataggtaagcaatcttcgatgcagaattaacctcaatacacaattttcc |
1304674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 2 - 99
Target Start/End: Original strand, 1304396 - 1304493
Alignment:
| Q |
2 |
taaaggtattaggaccatatctatgagtggtatctttgtccaaattctttggcaagttgataatttcgatggctccaaaaggacatttctacagcaat |
99 |
Q |
| |
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|||| ||||||||||||||||||||||| || |||||||||||||||| |||||||||||||| | || ||| |||||||||||||||||| |||| |
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| T |
1304396 |
taaaagtattaggaccatatctatgagttgtttctttgtccaaattctccggcaagttgataatcttaattgcttcaaaaggacatttctacaccaat |
1304493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 341
Target Start/End: Original strand, 1304784 - 1304840
Alignment:
| Q |
285 |
gacgacaggacaactcttcttgcactcttgacggcactttttcggtttgcatttgtc |
341 |
Q |
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||||||||| ||||||||||| ||||| || || ||||||||||| |||||| |||| |
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| T |
1304784 |
gacgacagggcaactcttcttacactcctgtcgacactttttcggcttgcatctgtc |
1304840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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