View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3212_1D_low_6 (Length: 334)

Name: NF3212_1D_low_6
Description: NF3212_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3212_1D_low_6
NF3212_1D_low_6
[»] chr1 (15 HSPs)
chr1 (41-318)||(34309489-34309771)
chr1 (41-104)||(45525799-45525862)
chr1 (41-110)||(35190668-35190737)
chr1 (41-110)||(45531903-45531972)
chr1 (62-110)||(35476643-35476691)
chr1 (41-110)||(35147654-35147723)
chr1 (41-110)||(35200237-35200306)
chr1 (41-110)||(35205250-35205319)
chr1 (41-110)||(35295656-35295725)
chr1 (41-110)||(35212292-35212361)
chr1 (63-110)||(35248593-35248640)
chr1 (40-108)||(35252395-35252463)
chr1 (52-110)||(35219396-35219454)
chr1 (52-110)||(35225239-35225297)
chr1 (62-110)||(35216256-35216304)
[»] chr2 (1 HSPs)
chr2 (49-110)||(33138421-33138482)
[»] chr3 (5 HSPs)
chr3 (40-107)||(23332094-23332161)
chr3 (49-107)||(19246778-19246836)
chr3 (49-200)||(899486-899642)
chr3 (49-107)||(17664375-17664433)
chr3 (46-105)||(53924101-53924160)
[»] chr7 (2 HSPs)
chr7 (52-110)||(38634919-38634977)
chr7 (53-110)||(38632183-38632240)


Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 41 - 318
Target Start/End: Complemental strand, 34309771 - 34309489
Alignment:
Q  41 gtgggatgattaacactctttccttgtccccaaatactcagtatgcggcttatctcgtgttcaagatgat-aatgcatacagatttgataatgaacctat 139  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  34309771 gtgggatgattaacactctttccttgtccccaaatactcagtatgcggcttatctcgtgttcaagatgattaatgcatacggatttgataatgaacctat 34309672  T
Q  140 ggatttatccgttggtgttgaagct----atagcagcactaaatctgtctgtttggatccgaacgtgaaacatcgtgtcaggcaannnnnnngtaaatgt 235  Q
    ||||||||||||||||||||||| |    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||    
T  34309671 ggatttatccgttggtgttgaaggtggacatagcagcactaaatctgtctgtttggatccgaacgtgaaacatcgtgtcaggcaatttttttgtaaatgt 34309572  T
Q  236 tatggctggtgcccccatcgtgcgaggaggccacgtaacaaagtattaggattgcaacgtcctaatgtaagaagtgatggatg 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34309571 tatggctggtgcccccatcgtgcgaggaggccacgtaacaaagtattaggattgcaacgtcctaatgtaagaagtgatggatg 34309489  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 41 - 104
Target Start/End: Complemental strand, 45525862 - 45525799
Alignment:
Q  41 gtgggatgattaacactctttccttgtccccaaatactcagtatgcggcttatctcgtgttcaa 104  Q
    ||||||||||||||| |||| ||||||| ||||||||||||||||| |||||||||||||||||    
T  45525862 gtgggatgattaacaatcttgccttgtctccaaatactcagtatgcagcttatctcgtgttcaa 45525799  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 41 - 110
Target Start/End: Complemental strand, 35190737 - 35190668
Alignment:
Q  41 gtgggatgattaacactctttccttgtccccaaatactcagtatgcggcttatctcgtgttcaagatgat 110  Q
    |||||||||| || || ||| |||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  35190737 gtgggatgataaatacccttgccttgtccccaaatacccagtatgcggcttatcttgtgttcaagatgat 35190668  T

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Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 41 - 110
Target Start/End: Complemental strand, 45531972 - 45531903
Alignment:
Q  41 gtgggatgattaacactctttccttgtccccaaatactcagtatgcggcttatctcgtgttcaagatgat 110  Q
    ||||||||||||||| |||| ||||||||||||||||||| ||||| |||||||| |||||||| |||||    
T  45531972 gtgggatgattaacaatcttgccttgtccccaaatactcaatatgcagcttatcttgtgttcaaaatgat 45531903  T

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Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 62 - 110
Target Start/End: Complemental strand, 35476691 - 35476643
Alignment:
Q  62 ccttgtccccaaatactcagtatgcggcttatctcgtgttcaagatgat 110  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  35476691 ccttgtccccaaatactcagtatgcggcttatcttgtgttcaagatgat 35476643  T

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Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 41 - 110
Target Start/End: Complemental strand, 35147723 - 35147654
Alignment:
Q  41 gtgggatgattaacactctttccttgtccccaaatactcagtatgcggcttatctcgtgttcaagatgat 110  Q
    |||||| ||| ||||| |||  ||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  35147723 gtgggacgataaacacccttagcttgtccccaaatacccagtatgcggcttatcttgtgttcaagatgat 35147654  T

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Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 41 - 110
Target Start/End: Complemental strand, 35200306 - 35200237
Alignment:
Q  41 gtgggatgattaacactctttccttgtccccaaatactcagtatgcggcttatctcgtgttcaagatgat 110  Q
    |||||||||| ||||  ||| | ||||||||||||||||||||||| |||||||| ||||||||||||||    
T  35200306 gtgggatgataaacatgcttgcattgtccccaaatactcagtatgcagcttatcttgtgttcaagatgat 35200237  T

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Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 41 - 110
Target Start/End: Complemental strand, 35205319 - 35205250
Alignment:
Q  41 gtgggatgattaacactctttccttgtccccaaatactcagtatgcggcttatctcgtgttcaagatgat 110  Q
    ||||||||||||||| |||| | ||||| ||||||||||| ||||| |||||||| ||||||||||||||    
T  35205319 gtgggatgattaacaatcttgcattgtctccaaatactcaatatgcagcttatcttgtgttcaagatgat 35205250  T

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Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 41 - 110
Target Start/End: Original strand, 35295656 - 35295725
Alignment:
Q  41 gtgggatgattaacactctttccttgtccccaaatactcagtatgcggcttatctcgtgttcaagatgat 110  Q
    |||||||||| ||||| | | ||||||||||||||||||| ||||| |||||||| ||||||||||||||    
T  35295656 gtgggatgataaacacccctgccttgtccccaaatactcaatatgcagcttatcttgtgttcaagatgat 35295725  T

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Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 110
Target Start/End: Complemental strand, 35212361 - 35212292
Alignment:
Q  41 gtgggatgattaacactctttccttgtccccaaatactcagtatgcggcttatctcgtgttcaagatgat 110  Q
    ||||| ||||||||  |||| ||||||| ||||||||||  |||||||||||||| ||||||||||||||    
T  35212361 gtggggtgattaacgatcttgccttgtctccaaatactcgctatgcggcttatcttgtgttcaagatgat 35212292  T

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Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 110
Target Start/End: Complemental strand, 35248640 - 35248593
Alignment:
Q  63 cttgtccccaaatactcagtatgcggcttatctcgtgttcaagatgat 110  Q
    |||||||||||||||||||||||| |||||||| ||||||||| ||||    
T  35248640 cttgtccccaaatactcagtatgcagcttatcttgtgttcaaggtgat 35248593  T

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Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 108
Target Start/End: Complemental strand, 35252463 - 35252395
Alignment:
Q  40 tgtgggatgattaacactctttccttgtccccaaatactcagtatgcggcttatctcgtgttcaagatg 108  Q
    ||||| ||||| |||||  || ||||||||||||||||||||||||  || ||||| ||||||||||||    
T  35252463 tgtggtatgataaacaccattgccttgtccccaaatactcagtatgtagcgtatcttgtgttcaagatg 35252395  T

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Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 110
Target Start/End: Complemental strand, 35219454 - 35219396
Alignment:
Q  52 aacactctttccttgtccccaaatactcagtatgcggcttatctcgtgttcaagatgat 110  Q
    ||||| ||| ||||||| |||||||||| ||||||  ||||||| ||||||||||||||    
T  35219454 aacacccttaccttgtctccaaatactctgtatgcaacttatcttgtgttcaagatgat 35219396  T

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Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 110
Target Start/End: Complemental strand, 35225297 - 35225239
Alignment:
Q  52 aacactctttccttgtccccaaatactcagtatgcggcttatctcgtgttcaagatgat 110  Q
    ||||| ||| |||||||||||||||||| |||||   ||||||| ||||||||||||||    
T  35225297 aacacccttgccttgtccccaaatactcggtatgtaacttatcttgtgttcaagatgat 35225239  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 110
Target Start/End: Complemental strand, 35216304 - 35216256
Alignment:
Q  62 ccttgtccccaaatactcagtatgcggcttatctcgtgttcaagatgat 110  Q
    ||||||| |||||||||||||||||  ||||||| ||||| ||||||||    
T  35216304 ccttgtctccaaatactcagtatgcaacttatcttgtgtttaagatgat 35216256  T

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Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 33138421 - 33138482
Alignment:
Q  49 attaacactctttccttgtccccaaatactcagtatgcggcttatctcgtgttcaagatgat 110  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  33138421 attaacactctttccttgtccccaaatactcagtacgcggcttatctcgtgttcaagatgat 33138482  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 40 - 107
Target Start/End: Complemental strand, 23332161 - 23332094
Alignment:
Q  40 tgtgggatgattaacactctttccttgtccccaaatactcagtatgcggcttatctcgtgttcaagat 107  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||| ||||| |||||||| |||||    
T  23332161 tgtgggattattaacactctttcattgtccccaaatactcagtatgcagcttacctcgtgtttaagat 23332094  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 49 - 107
Target Start/End: Original strand, 19246778 - 19246836
Alignment:
Q  49 attaacactctttccttgtccccaaatactcagtatgcggcttatctcgtgttcaagat 107  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  19246778 attaagactctttccttgtccccaaatactcagtatgcagcttatctcgtcttcaagat 19246836  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 49 - 200
Target Start/End: Original strand, 899486 - 899642
Alignment:
Q  49 attaacactctttccttgtccccaaatactcagtatgcggcttatctcgtgttcaagatga-taatgcatacagatttgataatgaacctatggatttat 147  Q
    ||||||||| |||||||||||| |||||||  ||||||||||||||| ||||||||||||| | |||  ||  ||||||| ||||||||||||||  |||    
T  899486 attaacactttttccttgtcccaaaatacttggtatgcggcttatcttgtgttcaagatgattgatgattatggatttgagaatgaacctatggacctat 899585  T
Q  148 ccgttggtgttgaa----gctatagcagcactaaatctgtctgtttggatccgaacg 200  Q
    |  ||| ||| | |    || |||| ||||||||||| |||||||||||||| ||||    
T  899586 caattgatgtagtaggtggccatagtagcactaaatccgtctgtttggatccaaacg 899642  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 49 - 107
Target Start/End: Original strand, 17664375 - 17664433
Alignment:
Q  49 attaacactctttccttgtccccaaatactcagtatgcggcttatctcgtgttcaagat 107  Q
    ||||| |||||||| ||||||||||||||||||||||| ||||||||||| ||||||||    
T  17664375 attaagactctttcattgtccccaaatactcagtatgcagcttatctcgtcttcaagat 17664433  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 46 - 105
Target Start/End: Original strand, 53924101 - 53924160
Alignment:
Q  46 atgattaacactctttccttgtccccaaatactcagtatgcggcttatctcgtgttcaag 105  Q
    ||||| ||||| |||  ||||||||||||||||| ||||||||||||||| |||||||||    
T  53924101 atgataaacacccttgtcttgtccccaaatactcggtatgcggcttatcttgtgttcaag 53924160  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 110
Target Start/End: Complemental strand, 38634977 - 38634919
Alignment:
Q  52 aacactctttccttgtccccaaatactcagtatgcggcttatctcgtgttcaagatgat 110  Q
    |||||||||| |||||||| ||||||||||||||  |||||||| |||||| |||||||    
T  38634977 aacactctttacttgtcccgaaatactcagtatgtagcttatcttgtgttccagatgat 38634919  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 110
Target Start/End: Complemental strand, 38632240 - 38632183
Alignment:
Q  53 acactctttccttgtccccaaatactcagtatgcggcttatctcgtgttcaagatgat 110  Q
    |||||||| ||||||| | ||||||||||||||  |||||||| ||||||||| ||||    
T  38632240 acactcttgccttgtctcgaaatactcagtatgtagcttatcttgtgttcaagttgat 38632183  T

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