View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3212_2D_low_4 (Length: 477)
Name: NF3212_2D_low_4
Description: NF3212_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3212_2D_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 414; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 22 - 471
Target Start/End: Complemental strand, 42474020 - 42473571
Alignment:
| Q |
22 |
attaacagtggtccattcttttgccccaggataacacatgcttatagctagaacactagaaccaacacgtccgaaaattaatataacacatccagctgat |
121 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
42474020 |
attaacagtggtccattcttttgccccaggataacacatgcttatagctagaacactagaaccaacacgtccgaaaattaatataacacatccagttgat |
42473921 |
T |
|
| Q |
122 |
gttggagcacaagaaaaggcagcatttcggtatgtccttttaaagcttggcagcgtgatcagatccctagtaaagggattaaagagagaaaaaatgcaat |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
42473920 |
gttggagcacaagaaaaggcagcatttcggtatgtccttttaaagcttggcagcgtgatcagatccctagtaaagggattaaagagagaaaaaatgcgat |
42473821 |
T |
|
| Q |
222 |
ctctgtccaaactccgccagtcatgccggtttagcaataaccaaccatcttttgcatagcaaacacgacatccatccaactctggcaactcaagggaata |
321 |
Q |
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|||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42473820 |
ctctgtccaacctccgctagtcatgccggtttagcaataaccaaccatcttttgcatagcaaacacgacatccatccaactctggcaactcaagggaata |
42473721 |
T |
|
| Q |
322 |
gtcttacgctgcatagggtcataaaaatcataacaattaccaatttttgggaaatacataagccaaggtgattggtcgagtacacgtacagaagtggcaa |
421 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||| |
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| T |
42473720 |
gtcttacgctgcatagggtcataaaaatcataaaaattaccaatttttgggaaatacataagccgaggtgattggtccactacacgtacagaagtggcaa |
42473621 |
T |
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| Q |
422 |
ctgaacaccatctcttgcaaacagctgaagcacgaatattatccccaaca |
471 |
Q |
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| T |
42473620 |
ctgaacaccatctcttgcaaacagctgaagcacggatattatccccaaca |
42473571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 22 - 469
Target Start/End: Complemental strand, 42479558 - 42479110
Alignment:
| Q |
22 |
attaacagtggtccattcttttgccccaggataacacatgcttatagctagaacactagaaccaacacgtccgaaaattaatataacacatccagctgat |
121 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||| |||||||||||| || ||||||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
42479558 |
attaacagtggtccattctttttccccaggataacacgtgcttatagctacaagactagaaccaacacgtctgaaaattaatataacacatccagttgat |
42479459 |
T |
|
| Q |
122 |
gttggagcacaagaaaaggcagcatttcggtatgtccttttaaagcttggcagcgtgatcagatccctagtaaagggattaaagagagaaaaaatgcaat |
221 |
Q |
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||||||||||| || ||||||||| || | |||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||| |||||| || |
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| T |
42479458 |
gttggagcacatgagaaggcagcaatttgatatgtcctgtcaaattttggcagcgtgatcagatccctagtaaagggattaaagagagagaaaatgtgat |
42479359 |
T |
|
| Q |
222 |
ctctgtccaaactccgccagtcatgccggtttagcaataaccaaccatcttttgcatagcaaacacgacatccatccaactctggcaactcaagggaata |
321 |
Q |
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|| |||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42479358 |
ttccgtccaacctccgccagtcctgccggtttagcaataaccaaccatcttttgtatagcaaacacgacatccatccaactctggcaactcaagggaata |
42479259 |
T |
|
| Q |
322 |
-gtcttacgctgcatagggtcataaaaatcataacaattaccaatttttgggaaatacataagccaaggtgattggtcgagtacacgtacagaagtggca |
420 |
Q |
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||||||||||| | ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42479258 |
ggtcttacgctgaacagggtcatagaaatcataacaattacccttttttgggaaatacataagccaaggtgattggtcgagtacacgtacagaagtggca |
42479159 |
T |
|
| Q |
421 |
actgaacaccatctcttgcaaacagctgaagcacgaatattatccccaa |
469 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42479158 |
actgaacaccatctcttgcaaacagctgaagcacgaatattatccccaa |
42479110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 246 - 465
Target Start/End: Original strand, 26047145 - 26047365
Alignment:
| Q |
246 |
gccggtttagcaataaccaaccatcttttgcatagcaaacacgacatccatccaactctggcaactcaagggaata-gtcttacgctgcatagggtcata |
344 |
Q |
| |
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|||||| ||||| ||||||||||||||||| || ||||| | | |||||| ||||||||| ||||||| |||||| ||||| ||||| | ||||||||| |
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| T |
26047145 |
gccggtatagcagtaaccaaccatcttttgtgtaacaaactctagatccattcaactctggaaactcaatggaataggtcttccgctgaacagggtcata |
26047244 |
T |
|
| Q |
345 |
aaaatcataacaattaccaatttttgggaaatacataagccaaggtgattggtcgagtacacgtacagaagtggcaactgaacaccatctcttgcaaaca |
444 |
Q |
| |
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|| ||||| || | ||||| ||| || |||||||| | ||| |||||||||| | | ||||||| | ||||||| || ||| |||||||||||| |
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| T |
26047245 |
gaattcataccactgaccaaatttcggaaaatacatcaaccatggtgattggttcaccatgcgtacagcattggcaacaaaattccaactcttgcaaaca |
26047344 |
T |
|
| Q |
445 |
gctgaagcacgaatattatcc |
465 |
Q |
| |
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|| |||||||| | ||||||| |
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| T |
26047345 |
gcagaagcacggacattatcc |
26047365 |
T |
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Back To:
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