View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3212_2D_low_5 (Length: 344)
Name: NF3212_2D_low_5
Description: NF3212_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3212_2D_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 20 - 326
Target Start/End: Complemental strand, 8036514 - 8036207
Alignment:
| Q |
20 |
aagagaagagacagttttgatgagtttctttttgcattttggacaatcgatattaaccttcaacacagttttcttaaccatggagaaattatcaaccagc |
119 |
Q |
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| T |
8036514 |
aagagaagagacagttttgatgagtttctttttgcattttggacaatcgatattaaccttcaatacagttttcttaaccatggagaaattatcaaccagc |
8036415 |
T |
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| Q |
120 |
tttgttgtttctgatctcactagaatgtttgagtaaa-tactactaatccacaaggtttttcaaactttacaataactttggtctatggtgttttcaagt |
218 |
Q |
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| T |
8036414 |
tttgttgtttctgatctcactagaatgtttaagtaaaatactactaatacacaaggtttttcaaattttacaataactttggtctatggtgttttcaagt |
8036315 |
T |
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| Q |
219 |
agtagtattatatattatttaatgtttatttcgggtgaaccaaacgaggaaggtataacaggccactttgacggttatttgatggttgtttaccgtcctc |
318 |
Q |
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||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
8036314 |
agtagtattatatataaattaatgtttatttcgggtgaaccaaacgaggaaggtataacaggccactttgacggttatttaatggttgtttaccgtcctc |
8036215 |
T |
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| Q |
319 |
aacgaaac |
326 |
Q |
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|||||||| |
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| T |
8036214 |
aacgaaac |
8036207 |
T |
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