View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3213_high_6 (Length: 224)
Name: NF3213_high_6
Description: NF3213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3213_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 15 - 205
Target Start/End: Complemental strand, 11748389 - 11748199
Alignment:
| Q |
15 |
cacagagaagaacagtgcaatgaggccgaaaagcaacctgagtggtaatgacttgaggaaatccttttcggcataacgcgctgtgagaattccaatgaag |
114 |
Q |
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| T |
11748389 |
cacagagaagaacagtgcaatgaggccgaaaagcaacctgagtggtaatgacttgaggaaatccttttcagcataacgcgctgtgagaattccaatgaag |
11748290 |
T |
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| Q |
115 |
agaaggactgaagttgaagaagtgaaaagagatattgcatctgctattataaacacattaaatgtattgtcatgcaagaagaggggaattc |
205 |
Q |
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| T |
11748289 |
agaaggactgaagttgaagaagtgaaaagagatattgcatctgctattataaacacattaaatgtattgtcatgcaagaagaggggaattc |
11748199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 64 - 205
Target Start/End: Original strand, 11754256 - 11754397
Alignment:
| Q |
64 |
gacttgaggaaatccttttcggcataacgcgctgtgagaattccaatgaagagaaggactgaagttgaagaagtgaaaagagatattgcatctgctatta |
163 |
Q |
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| T |
11754256 |
gactttaggaaatccttttctgcaaaacgcgctgtgagaattccaatgaagagaaggactgaagttgatgaagtgaaaagagatattgcatctgctatta |
11754355 |
T |
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| Q |
164 |
taaacacattaaatgtattgtcatgcaagaagaggggaattc |
205 |
Q |
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| T |
11754356 |
taaacacattaaacattttgtcctttaagaagaggggaattc |
11754397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 36 - 205
Target Start/End: Original strand, 11790369 - 11790538
Alignment:
| Q |
36 |
gaggccgaaaagcaacctgagtggtaatgacttgaggaaatccttttcggcataacgcgctgtgagaattccaatgaagagaaggactgaagttgaagaa |
135 |
Q |
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| T |
11790369 |
gaggccgaagagtaacttaagtggcaaagactttaagaaatccttctctgcataacgcgccgtaaggattccaatgaagagaaggactgaagttgaagaa |
11790468 |
T |
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| Q |
136 |
gtgaaaagagatattgcatctgctattataaacacattaaatgtattgtcatgcaagaagaggggaattc |
205 |
Q |
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| T |
11790469 |
gtgaaaagagatattgcatctgctattataaacacattaaatgtgtagtcatgtaagaacaagggaattc |
11790538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 64 - 205
Target Start/End: Original strand, 11834614 - 11834755
Alignment:
| Q |
64 |
gacttgaggaaatccttttcggcataacgcgctgtgagaattccaatgaagagaaggactgaagttgaagaagtgaaaagagatattgcatctgctatta |
163 |
Q |
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| T |
11834614 |
gactttaggaaatccttttctgcataacgtgccgttagaattccaatgaagaggaggattgaagttgaggaagtgaaaagagatattgcatctgctatta |
11834713 |
T |
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| Q |
164 |
taaacacattaaatgtattgtcatgcaagaagaggggaattc |
205 |
Q |
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| T |
11834714 |
taaaaacattaaatgttttgtccttcaagaagaggggaattc |
11834755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 15 - 194
Target Start/End: Original strand, 11882177 - 11882356
Alignment:
| Q |
15 |
cacagagaagaacagtgcaatgaggccgaaaagcaacctgagtggtaatgacttgaggaaatccttttcggcataacgcgctgtgagaattccaatgaag |
114 |
Q |
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| T |
11882177 |
cacagagaagaaaagcataatgagtgcgaaaagtaaccttagtggcaatgacttgaggaagtctttttcagcgtaacgagccgttaggattccaatgaag |
11882276 |
T |
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| Q |
115 |
agaaggactgaagttgaagaagtgaaaagagatattgcatctgctattataaacacattaaatgtattgtcatgcaagaa |
194 |
Q |
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| T |
11882277 |
agaaggactgaagttgaagaagtgaaaagagatgctgcatctgctataataaacgcatcaaatgtgatgtcgtgcaagaa |
11882356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 64 - 205
Target Start/End: Original strand, 11751156 - 11751297
Alignment:
| Q |
64 |
gacttgaggaaatccttttcggcataacgcgctgtgagaattccaatgaagagaaggactgaagttgaagaagtgaaaagagatattgcatctgctatta |
163 |
Q |
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| T |
11751156 |
gactttaggaaatcattttcggcaaaactccctgtgagaattccaatgaagagaatgactgaagttgcagaagtgaaaagagaaattgcatctgctatga |
11751255 |
T |
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| Q |
164 |
taaacacattaaatgtattgtcatgcaagaagaggggaattc |
205 |
Q |
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| T |
11751256 |
tgaacacattaaatattttgccttgcaagaagataggaattc |
11751297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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