View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3213_low_2 (Length: 607)

Name: NF3213_low_2
Description: NF3213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3213_low_2
NF3213_low_2
[»] chr6 (8 HSPs)
chr6 (12-425)||(27878839-27879264)
chr6 (12-177)||(26976261-26976424)
chr6 (12-177)||(1234725-1234888)
chr6 (12-177)||(27874120-27874283)
chr6 (12-285)||(30966566-30966839)
chr6 (12-294)||(30986430-30986695)
chr6 (16-175)||(18967912-18968060)
chr6 (12-73)||(21966677-21966738)
[»] chr4 (12 HSPs)
chr4 (12-424)||(30950312-30950736)
chr4 (12-424)||(30945606-30946030)
chr4 (246-424)||(48697490-48697668)
chr4 (246-424)||(48702179-48702357)
chr4 (12-177)||(24520155-24520318)
chr4 (12-177)||(42265927-42266090)
chr4 (12-177)||(42270646-42270809)
chr4 (12-177)||(48697262-48697425)
chr4 (12-177)||(48701951-48702114)
chr4 (16-175)||(10427315-10427463)
chr4 (13-90)||(48782850-48782925)
chr4 (16-114)||(1979269-1979365)
[»] chr3 (10 HSPs)
chr3 (12-225)||(54545858-54546071)
chr3 (246-425)||(2817609-2817789)
chr3 (425-572)||(24689899-24690046)
chr3 (12-177)||(5818643-5818806)
chr3 (12-177)||(5823405-5823568)
chr3 (14-104)||(2817394-2817486)
chr3 (35-175)||(24671173-24671301)
chr3 (19-77)||(35977103-35977161)
chr3 (124-175)||(4579126-4579177)
chr3 (12-52)||(31204896-31204936)
[»] chr7 (4 HSPs)
chr7 (16-299)||(30234920-30235205)
chr7 (12-175)||(16183761-16183913)
chr7 (12-68)||(8138589-8138645)
chr7 (16-104)||(8140097-8140183)
[»] chr2 (16 HSPs)
chr2 (246-424)||(5199013-5199191)
chr2 (12-177)||(5198785-5198948)
chr2 (95-210)||(830176-830291)
chr2 (95-210)||(825520-825635)
chr2 (12-173)||(15602905-15603064)
chr2 (12-151)||(28715816-28715949)
chr2 (335-406)||(34614229-34614301)
chr2 (16-110)||(8004161-8004254)
chr2 (233-299)||(28715678-28715744)
chr2 (32-104)||(13840384-13840456)
chr2 (14-102)||(13843926-13844014)
chr2 (120-175)||(30397136-30397191)
chr2 (12-45)||(825632-825665)
chr2 (19-68)||(30397047-30397096)
chr2 (230-299)||(31593216-31593285)
chr2 (13-45)||(830288-830320)
[»] chr5 (6 HSPs)
chr5 (262-424)||(29585664-29585826)
chr5 (12-181)||(29585430-29585597)
chr5 (12-177)||(34352272-34352435)
chr5 (12-177)||(34359980-34360143)
chr5 (12-177)||(41718434-41718597)
chr5 (12-177)||(41723160-41723323)
[»] chr8 (2 HSPs)
chr8 (12-177)||(9439502-9439665)
chr8 (12-177)||(9444222-9444385)
[»] chr1 (3 HSPs)
chr1 (12-175)||(46191266-46191418)
chr1 (12-68)||(30697244-30697300)
chr1 (12-112)||(4130173-4130272)
[»] scaffold0074 (1 HSPs)
scaffold0074 (12-175)||(27356-27508)


Alignment Details
Target: chr6 (Bit Score: 314; Significance: 1e-177; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 12 - 425
Target Start/End: Original strand, 27878839 - 27879264
Alignment:
Q  12 agagaactttcactaagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacaaacact 111  Q
    |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27878839 agagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaacact 27878938  T
Q  112 aacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactattctactaagaacaagtagttgttgtgttactttg 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  27878939 aacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctctctattctactaagaacaagtagttgttgtgttactttg 27879038  T
Q  212 ttat-gtgatggt---------gtat-agaacaatggtacaagag-catgctatttatactggtgaaagagccatgccccaaccaattgcatttatggca 299  Q
    || | ||| || |         | || || | |||||| |||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  27879039 ttctggtgttgttactaatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagccatgccccaaccaattgcatttatggca 27879138  T
Q  300 gcgtgtgaattttcaactttgcatagtaactttccatgtgaacatagaaattacatgccaacatgttttactgccatgtgataacagttcaacaaaagtg 399  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  27879139 gcgtgtgaattttcaactttgcatagtaactttccatgtgaacatagaaattacatgccaacatgttttactgccatgtgataacacttcaacaaaagtg 27879238  T
Q  400 gctttaccactttcctgtgttcacat 425  Q
    |||||||||||||||||||| |||||    
T  27879239 gctttaccactttcctgtgtccacat 27879264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 12 - 177
Target Start/End: Original strand, 26976261 - 26976424
Alignment:
Q  12 agagaactttcactaagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacaaacact 111  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||    
T  26976261 agagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacta--act 26976358  T
Q  112 aacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactat 177  Q
    ||||| | ||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||    
T  26976359 aacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactat 26976424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 12 - 177
Target Start/End: Complemental strand, 1234888 - 1234725
Alignment:
Q  12 agagaactttcactaagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacaaacact 111  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |  |||    
T  1234888 agagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttataaataggagaatacta--act 1234791  T
Q  112 aacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactat 177  Q
    ||||| | ||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||    
T  1234790 aacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactat 1234725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 12 - 177
Target Start/End: Original strand, 27874120 - 27874283
Alignment:
Q  12 agagaactttcactaagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacaaacact 111  Q
    |||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||    
T  27874120 agagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaa--act 27874217  T
Q  112 aacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactat 177  Q
    ||||| | ||||||||||||||||||||||| ||| |||| |||||||||||||| ||||||||||    
T  27874218 aacacaaactaggagaaacctcacaggagaagctatttttcctctctatattttttctctcactat 27874283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 12 - 285
Target Start/End: Complemental strand, 30966839 - 30966566
Alignment:
Q  12 agagaactttcactaagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacaaacact 111  Q
    |||||||||||||||||||||| ||||| ||| |||||||||||| | ||||||||||||||||||||||||||||| ||||||| |||||||      |    
T  30966839 agagaactttcactaagtggaagaaattgcagaacctctctctaaatgcaaggagagtacaattaccactctctcttgtaaatagaagaatac------t 30966746  T
Q  112 aacactacctaggagaaacctcacagg-agaaactaatt-tttctctctatatttttcctctcactattctacta-agaacaag----tagttgttgtgt 204  Q
     |  ||||||||||||||||||||| | |||||||| || ||||||||||||||||| |||||   | ||||||| |||||||     | | ||||||||    
T  30966745 gaggctacctaggagaaacctcacaagtagaaactatttctttctctctatattttttctctcta-actctactatagaacaaaacacttgctgttgtgt 30966647  T
Q  205 tactttgttatgtgatggtgtatagaacaatggtacaagagcatgctatttatactggtgaaagagccatgccccaaccaa 285  Q
    ||||||||| |||||||||||   |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  30966646 tactttgttctgtgatggtgtgaggaacaatggtacaagagcatgctatttatactagtgaaagagccatgccccaaccaa 30966566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 12 - 294
Target Start/End: Complemental strand, 30986695 - 30986430
Alignment:
Q  12 agagaactttcactaagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacaaacact 111  Q
    |||||||||||||||||||||| ||||| |||||||||||||||| | ||||||||||||||||||||||||||||| ||||||| |||||      |||    
T  30986695 agagaactttcactaagtggaagaaattgcaggacctctctctaaatgcaaggagagtacaattaccactctctcttgtaaatagaagaat------act 30986602  T
Q  112 aacactacctaggagaaacctca-caggagaaactaatttttctctctatatttttcctctcactattctactaagaacaagtagttgttgtgttacttt 210  Q
     ||||||||||||||||||||||  |||||||||||   ||||| |||         |||| ||| | |||  |  ||  | | ||||||||||||||||    
T  30986601 gacactacctaggagaaacctcatgaggagaaacta---tttctttct---------ctctaactctactagaacaaaacacttgttgttgtgttacttt 30986514  T
Q  211 gttatgtgatggtgtatagaacaatggtacaagagcatgctatttatactggtgaaagagccatgccccaaccaattgcattta 294  Q
    ||| |||||||||||    |||||| |||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||    
T  30986513 gttctgtgatggtgtgagtaacaatagtacaagagcatgctatttatattagtgaaagagccatgccccaaccaattacattta 30986430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 16 - 175
Target Start/End: Complemental strand, 18968060 - 18967912
Alignment:
Q  16 aactttcactaagtggaaaa-aattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacaaacactaac 114  Q
    |||||||||||||||||| | ||||||| ||| ||||||||| |||||||||||   ||||| | ||||||| |  |||||||||||||| |||||||      
T  18968060 aactttcactaagtggaagacaattacaagacttctctctaaatacaaggagagacaaattagc-ctctctcatg-aaataggagaatactaacacta-- 18967965  T
Q  115 actacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcact 175  Q
            |||||||||||||| |||||||||  ||| |||| ||||||||||||||||||    
T  18967964 --------ggagaaacctcacaagagaaactatatttcctctttatatttttcctctcact 18967912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 21966738 - 21966677
Alignment:
Q  12 agagaactttcactaagtggaaaaaattacaggacctctctctaactacaaggagagtacaa 73  Q
    |||||||||||||||| ||||| |||||| | ||||||||||||| | ||| ||||||||||    
T  21966738 agagaactttcactaaatggaagaaattataagacctctctctaatttcaaagagagtacaa 21966677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 12 - 424
Target Start/End: Original strand, 30950312 - 30950736
Alignment:
Q  12 agagaactttcactaagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacaaacact 111  Q
    |||||||||||||||||||||| ||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  30950312 agagaactttcactaagtggaagaaattacagaacctctctctaaatacaaggaaagtacaattaccactctctcttataaataggagaatacaaacact 30950411  T
Q  112 aacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactattctactaagaacaagtagttgttgtgttactttg 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  30950412 aacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctctctattctactaagaacaagtagttgttgtgttactttg 30950511  T
Q  212 ttat-gtgatggt---------gtat-agaacaatggtacaagag-catgctatttatactggtgaaagagccatgccccaaccaattgcatttatggca 299  Q
    |||| ||| || |         | || || | |||||| |||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  30950512 ttatggtgttgttactaatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagccatgccccaaccaattgcatttatggca 30950611  T
Q  300 gcgtgtgaattttcaactttgcatagtaactttccatgtgaacatagaaattacatgccaacatgttttactgccatgtgataacagttcaacaaaagtg 399  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  30950612 gcgtgtgaattttcaactttgcatagtaactttccatgtgaacatagaaattacatgccaacatgttttactgccatgtgataacacttcaacaaaagtg 30950711  T
Q  400 gctttaccactttcctgtgttcaca 424  Q
    |||||||||||||||||||||||||    
T  30950712 gctttaccactttcctgtgttcaca 30950736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 12 - 424
Target Start/End: Original strand, 30945606 - 30946030
Alignment:
Q  12 agagaactttcactaagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacaaacact 111  Q
    |||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30945606 agagaactttcactaagtggaagaaattacagaacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaacact 30945705  T
Q  112 aacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactattctactaagaacaagtagttgttgtgttactttg 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  30945706 aacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctctctattctactaagaacaagtagttgttgtgttactttg 30945805  T
Q  212 ttat-gtgatggt---------gtat-agaacaatggtacaagag-catgctatttatactggtgaaagagccatgccccaaccaattgcatttatggca 299  Q
    || | ||| || |         | || || | |||||| |||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  30945806 ttctggtgttgttactaatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagccatgccccaaccaattgcatttatggca 30945905  T
Q  300 gcgtgtgaattttcaactttgcatagtaactttccatgtgaacatagaaattacatgccaacatgttttactgccatgtgataacagttcaacaaaagtg 399  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  30945906 gcatgtgaattttcaactttgcatagtaactttccatgtgaacatagaaattacatgccaacatgttttactgccatgtgataacacttcaacaaaagtg 30946005  T
Q  400 gctttaccactttcctgtgttcaca 424  Q
    |||||||||||||||||||||||||    
T  30946006 gctttaccactttcctgtgttcaca 30946030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 246 - 424
Target Start/End: Original strand, 48697490 - 48697668
Alignment:
Q  246 catgctatttatactggtgaaagagccatgccccaaccaattgcatttatggcagcgtgtgaattttcaactttgcatagtaactttccatgtgaacata 345  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  48697490 catgctatttatactagtgaaagagccatgccccaaccaattgcatttatggcagcatgtgaattttcaactttgcatagtaactttccatgtgaacata 48697589  T
Q  346 gaaattacatgccaacatgttttactgccatgtgataacagttcaacaaaagtggctttaccactttcctgtgttcaca 424  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  48697590 gaaattacatgccaacatgttttactgccatgtgataacacttcaacaaaagtggctttaccactttcctgtgttcaca 48697668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 246 - 424
Target Start/End: Original strand, 48702179 - 48702357
Alignment:
Q  246 catgctatttatactggtgaaagagccatgccccaaccaattgcatttatggcagcgtgtgaattttcaactttgcatagtaactttccatgtgaacata 345  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  48702179 catgctatttatactagtgaaagagccatgccccaaccaattgcatttatggcagcgtgtggattttcaactttgcatagtaactttccatgtgaacata 48702278  T
Q  346 gaaattacatgccaacatgttttactgccatgtgataacagttcaacaaaagtggctttaccactttcctgtgttcaca 424  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  48702279 gaaattacatgccaacatgttttactgccatgtgataacacttcaacaaaagtggctttaccactttcctgtgttcaca 48702357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 12 - 177
Target Start/End: Original strand, 24520155 - 24520318
Alignment:
Q  12 agagaactttcactaagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacaaacact 111  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||    
T  24520155 agagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacta--act 24520252  T
Q  112 aacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactat 177  Q
    ||||| | ||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||    
T  24520253 aacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactat 24520318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 12 - 177
Target Start/End: Complemental strand, 42266090 - 42265927
Alignment:
Q  12 agagaactttcactaagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacaaacact 111  Q
    |||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||    
T  42266090 agagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaa--act 42265993  T
Q  112 aacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactat 177  Q
    ||||| | ||||||||||||||||||||||| ||| |||| |||||||||||||| ||||||||||    
T  42265992 aacacaaactaggagaaacctcacaggagaagctatttttcctctctatattttttctctcactat 42265927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 12 - 177
Target Start/End: Complemental strand, 42270809 - 42270646
Alignment:
Q  12 agagaactttcactaagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacaaacact 111  Q
    |||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||    
T  42270809 agagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaa--act 42270712  T
Q  112 aacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactat 177  Q
    ||||| | ||||||||||||||||||||||| ||| |||| |||||||||||||| ||||||||||    
T  42270711 aacacaaactaggagaaacctcacaggagaagctatttttcctctctatattttttctctcactat 42270646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 12 - 177
Target Start/End: Original strand, 48697262 - 48697425
Alignment:
Q  12 agagaactttcactaagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacaaacact 111  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |  |||    
T  48697262 agagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttataaataggagaatacta--act 48697359  T
Q  112 aacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactat 177  Q
    ||||| | ||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||    
T  48697360 aacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactat 48697425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 12 - 177
Target Start/End: Original strand, 48701951 - 48702114
Alignment:
Q  12 agagaactttcactaagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacaaacact 111  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |  |||    
T  48701951 agagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttataaataggagaatacta--act 48702048  T
Q  112 aacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactat 177  Q
    ||||| | ||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||    
T  48702049 aacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactat 48702114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 16 - 175
Target Start/End: Complemental strand, 10427463 - 10427315
Alignment:
Q  16 aactttcactaagtggaaaa-aattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacaaacactaac 114  Q
    |||||||||||||||||| | ||||||| ||| ||||||||| |||||||||||   ||||||| |||||||||  |||||||||||||| |||||||      
T  10427463 aactttcactaagtggaagacaattacaagacttctctctaaatacaaggagagacaaattacc-ctctctcttg-aaataggagaatactaacacta-- 10427368  T
Q  115 actacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcact 175  Q
            ||||||||||||||||||||||||  ||| |||||||||||||||||||||||    
T  10427367 --------ggagaaacctcacaggagaaactatatttcctctctatatttttcctctcact 10427315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 13 - 90
Target Start/End: Complemental strand, 48782925 - 48782850
Alignment:
Q  13 gagaactttcactaagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttat 90  Q
    ||||||||||||||||||||| |||||| | ||||||||||||| |||| |  |||||||||||||||||||||||||    
T  48782925 gagaactttcactaagtggaagaaattagatgacctctctctaaatacatg--gagtacaattaccactctctcttat 48782850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 114
Target Start/End: Complemental strand, 1979365 - 1979269
Alignment:
Q  16 aactttcactaagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacaaacactaac 114  Q
    |||||||| |||| |||| |||||||| |||||||||  || | ||||||| ||| | |||||||||||||||||||| |||||||||| | |||||||    
T  1979365 aactttcagtaagaggaagaaattacacgacctctct--aaatgcaaggagggtatatttaccactctctcttataaacaggagaatactagcactaac 1979269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 12 - 225
Target Start/End: Complemental strand, 54546071 - 54545858
Alignment:
Q  12 agagaactttcactaagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacaaacact 111  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54546071 agagaactttcactaagtggatgaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacaaacact 54545972  T
Q  112 aacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactattctactaagaacaagtagttgttgtgttactttg 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54545971 aacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactattctactaagaacaagtagttgttgtgttactttg 54545872  T
Q  212 ttatgtgatggtgt 225  Q
    || |||||||||||    
T  54545871 ttctgtgatggtgt 54545858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 246 - 425
Target Start/End: Original strand, 2817609 - 2817789
Alignment:
Q  246 catgctatttatactggtgaaagagccatgccccaaccaattgcatttatggcagcgtgtgaattttcaactttgcatagtaactttccatgtgaacata 345  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  2817609 catgctatgtatactagtgaaagagccatgccccaaccaattgcatttatggcagcgtgtgaattttcaactttgcatagtaacttcccatgtgaacata 2817708  T
Q  346 gaaattacatgccaacatgttttactgccatgtgataacagttcaacaaaagtggcttta-ccactttcctgtgttcacat 425  Q
    |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||  |||||||||||||||||||    
T  2817709 gaaattacatgccaacatattttactgccatgtgataacaattcaacaaaagtggctttatgcactttcctgtgttcacat 2817789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 425 - 572
Target Start/End: Original strand, 24689899 - 24690046
Alignment:
Q  425 ttttgctagtgcacgcggtgaattgaacaaggccaaataaacttcaccacctttatggtgtggttttaggggaacgggttctctacatcgaaaatctcat 524  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  24689899 ttttgctagtgcacgcggtgaattgaacaaggccaaataaacttcaccacctttatggtgtggttttaggggaacgggttctctacatcaaaaatctcat 24689998  T
Q  525 gttttatccgtttagtcaatctccaccattcaaacaccataatctctc 572  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  24689999 gttttctccgtttagtcaatctccaccattcaaacaccataatctctc 24690046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 12 - 177
Target Start/End: Original strand, 5818643 - 5818806
Alignment:
Q  12 agagaactttcactaagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacaaacact 111  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||    
T  5818643 agagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacta--act 5818740  T
Q  112 aacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactat 177  Q
    ||||| | ||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||    
T  5818741 aacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactat 5818806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 12 - 177
Target Start/End: Original strand, 5823405 - 5823568
Alignment:
Q  12 agagaactttcactaagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacaaacact 111  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||    
T  5823405 agagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacta--act 5823502  T
Q  112 aacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactat 177  Q
    ||||| | ||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||    
T  5823503 aacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactat 5823568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 14 - 104
Target Start/End: Original strand, 2817394 - 2817486
Alignment:
Q  14 agaactttcactaagtggaaaaaattacaggacctctctctaactacaaggagagtacaattacca--ctctctcttataaataggagaatac 104  Q
    |||||| ||||||||||||| |||||||| || |||||||||| ||||||||||||||||| ||||  |||||||||||||||||||||||||    
T  2817394 agaactctcactaagtggaagaaattacaagaactctctctaaatacaaggagagtacaatcaccactctctctcttataaataggagaatac 2817486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 35 - 175
Target Start/End: Original strand, 24671173 - 24671301
Alignment:
Q  35 aaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacaaacactaacactacctaggagaaacctca 134  Q
    |||||||| ||| ||||||||| |||||||||||   ||||||| |||||||||  |||||||||||||| |||||||          ||||||||||||    
T  24671173 aaattacaagacttctctctaaatacaaggagagacaaattacc-ctctctcttg-aaataggagaatactaacacta----------ggagaaacctca 24671260  T
Q  135 caggagaaactaatttttctctctatatttttcctctcact 175  Q
    ||||||||||||  ||| |||||||||||||||||||||||    
T  24671261 caggagaaactatatttcctctctatatttttcctctcact 24671301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 35977161 - 35977103
Alignment:
Q  19 tttcactaagtggaaaaaattacaggacctctctctaactacaaggagagtacaattac 77  Q
    |||||||||||||||||||||||| ||| ||||||||| ||||||||||| ||||||||    
T  35977161 tttcactaagtggaaaaaattacaagacttctctctaaatacaaggagagaacaattac 35977103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 124 - 175
Target Start/End: Complemental strand, 4579177 - 4579126
Alignment:
Q  124 gagaaacctcacaggagaaactaatttttctctctatatttttcctctcact 175  Q
    |||||||||||||||||||||||  ||| |||||||||||||||||||||||    
T  4579177 gagaaacctcacaggagaaactatatttcctctctatatttttcctctcact 4579126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 12 - 52
Target Start/End: Original strand, 31204896 - 31204936
Alignment:
Q  12 agagaactttcactaagtggaaaaaattacaggacctctct 52  Q
    |||||||||||||||||||| ||||||||||  ||||||||    
T  31204896 agagaactttcactaagtgggaaaaattacaaaacctctct 31204936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 174; Significance: 3e-93; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 16 - 299
Target Start/End: Complemental strand, 30235205 - 30234920
Alignment:
Q  16 aactttcactaagtggaaaaaattacaggacctctctc-taactacaaggagagtacaattaccactctctcttataaataggagaatacaaacactaac 114  Q
    |||||||| ||| | ||| ||||||||||||||||||| ||  || ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30235205 aactttcaataactagaagaaattacaggacctctctcctatttataaggagagtacaattaccactctctcttataaataggagaatacaaacactaac 30235106  T
Q  115 actacctaggagaaacctcaca-ggagaaactaatttttctctctatatttttcctctcactattctactaagaacaagtagttgttgtgttactttgtt 213  Q
    ||||| || ||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||    
T  30235105 actacgtaagagaaacctcataaggagaaactaatttttctctctatatttttcctctcactactctattgagaacaagtagttgttgtgttactttgtt 30235006  T
Q  214 atgtgatggtgtatagaacaatggtacaagagcatgctatttatactggtgaaagagccatgccccaaccaattgcatttatggca 299  Q
     | ||||||  |    ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  30235005 ctctgatgggatgagaaacaatggtacaagaacatgctatttatactagtgaaagagccatgccccaaccaattacatttatggca 30234920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 12 - 175
Target Start/End: Original strand, 16183761 - 16183913
Alignment:
Q  12 agagaactttcactaagtggaaaa-aattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacaaacac 110  Q
    |||||||||||||||||||||| | ||||||| ||||||||||||| |||||||||||   ||||||| |||||||||  |||||||||||||| ||||     
T  16183761 agagaactttcactaagtggaagacaattacaagacctctctctaaatacaaggagagacaaattacc-ctctctctt-gaaataggagaatactaaca- 16183857  T
Q  111 taacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcact 175  Q
             |||||||||||||||||||||||||||  ||| |||||||||||||||||||||||    
T  16183858 ---------ctaggagaaacctcacaggagaaactatatttcctctctatatttttcctctcact 16183913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 68
Target Start/End: Original strand, 8138589 - 8138645
Alignment:
Q  12 agagaactttcactaagtggaaaaaattacaggacctctctctaactacaaggagag 68  Q
    |||||||||||||||| ||||| |||||||| |||||| |||||| |||||||||||    
T  8138589 agagaactttcactaaatggaagaaattacaagacctccctctaaatacaaggagag 8138645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 104
Target Start/End: Original strand, 8140097 - 8140183
Alignment:
Q  16 aactttcactaagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatac 104  Q
    |||||||||| ||||||| |||||| | ||||||||||| | |||||||||||   ||||||| |||||||||  ||||||||||||||    
T  8140097 aactttcactcagtggaagaaattataagacctctctcttaatacaaggagagacaaattacc-ctctctctt-gaaataggagaatac 8140183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 163; Significance: 9e-87; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 246 - 424
Target Start/End: Original strand, 5199013 - 5199191
Alignment:
Q  246 catgctatttatactggtgaaagagccatgccccaaccaattgcatttatggcagcgtgtgaattttcaactttgcatagtaactttccatgtgaacata 345  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  5199013 catgctatttatactagtgaaagagccatgccccaaccaattgcatttatggcagcgtgtggattttcaactttgcatagtaactttccatgtgaacata 5199112  T
Q  346 gaaattacatgccaacatgttttactgccatgtgataacagttcaacaaaagtggctttaccactttcctgtgttcaca 424  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  5199113 gaaattacatgccaacatgttttactgccatgtgataacacttcaacaaaagtggctttaccactttcctatgttcaca 5199191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 12 - 177
Target Start/End: Original strand, 5198785 - 5198948
Alignment:
Q  12 agagaactttcactaagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacaaacact 111  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |  |||    
T  5198785 agagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttataaataggagaatacta--act 5198882  T
Q  112 aacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactat 177  Q
    ||||| | ||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||    
T  5198883 aacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactat 5198948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 95 - 210
Target Start/End: Complemental strand, 830291 - 830176
Alignment:
Q  95 aggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactattctactaagaacaagta 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  830291 aggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactattctactaagaacaagta 830192  T
Q  195 gttgttgtgttacttt 210  Q
    ||||||||||||||||    
T  830191 gttgttgtgttacttt 830176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 95 - 210
Target Start/End: Complemental strand, 825635 - 825520
Alignment:
Q  95 aggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactattctactaagaacaagta 194  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  825635 aggagaatacaaacactaacactacctaggagaaacctcgcaggagaaactaatttttctctctatatttttcctctcactattctactaagaacaagta 825536  T
Q  195 gttgttgtgttacttt 210  Q
    ||||||||||||||||    
T  825535 gttgttgtgttacttt 825520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 12 - 173
Target Start/End: Complemental strand, 15603064 - 15602905
Alignment:
Q  12 agagaactttcactaagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacaaacact 111  Q
    |||||||||||||||||| ||| |||||||| ||||||||||||| | || |||| |||||||||||| ||| |||| ||||||||||||||| |  |||    
T  15603064 agagaactttcactaagtagaagaaattacaagacctctctctaaatgcatggagtgtacaattaccattctatcttgtaaataggagaatacta--act 15602967  T
Q  112 aacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctca 173  Q
    ||||||  ||| ||||||||||| || | || ||||||||||| ||||||||||||||||||    
T  15602966 aacacttactaagagaaacctcatagaaaaatctaatttttctttctatatttttcctctca 15602905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 12 - 151
Target Start/End: Complemental strand, 28715949 - 28715816
Alignment:
Q  12 agagaactttcactaagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacaaacact 111  Q
    ||||||||||||| |||||||| |||||||||||| ||||||||| | |||||||||||||||||||||  | || |||||||||||||||      |||    
T  28715949 agagaactttcacaaagtggaagaaattacaggacatctctctaaatgcaaggagagtacaattaccaccgtttcctataaataggagaat------act 28715856  T
Q  112 aacactacctaggagaaacctcacaggagaaactaatttt 151  Q
    ||||||||||||||||||||| ||| ||||||||| ||||    
T  28715855 aacactacctaggagaaaccttacaagagaaactattttt 28715816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 335 - 406
Target Start/End: Original strand, 34614229 - 34614301
Alignment:
Q  335 atgtgaacatagaaattacatgccaacatgttttactgccatgtgataacagttcaacaaaa-gtggctttac 406  Q
    |||| |||||||||||||||||| |||||||||||||||||||||| |||| |||||||||| ||||||||||    
T  34614229 atgtaaacatagaaattacatgctaacatgttttactgccatgtgacaacaattcaacaaaaggtggctttac 34614301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 16 - 110
Target Start/End: Complemental strand, 8004254 - 8004161
Alignment:
Q  16 aactttcactaagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacaaacac 110  Q
    |||||||||| | ||||| |||||| |  |||||||| ||| |  ||| ||||||||||||| |||||||||||||||||||||||||| |||||    
T  8004254 aactttcactgaatggaagaaattataaaacctctctttaaatgtaagaagagtacaattac-actctctcttataaataggagaatactaacac 8004161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 233 - 299
Target Start/End: Complemental strand, 28715744 - 28715678
Alignment:
Q  233 aatggtacaagagcatgctatttatactggtgaaagagccatgccccaaccaattgcatttatggca 299  Q
    |||||| |||||||||||||||||||   |||||||| |||||||||||||| || |||||||||||    
T  28715744 aatggtgcaagagcatgctatttataggagtgaaagaaccatgccccaaccatttacatttatggca 28715678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 104
Target Start/End: Original strand, 13840384 - 13840456
Alignment:
Q  32 aaaaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatac 104  Q
    |||||||||||  |||||||||||| || ||||||||||||||||| | ||||||||| |||||  |||||||    
T  13840384 aaaaaattacaaaacctctctctaaatataaggagagtacaattacaattctctcttaaaaataaaagaatac 13840456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 102
Target Start/End: Original strand, 13843926 - 13844014
Alignment:
Q  14 agaactttcactaagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaat 102  Q
    |||| ||||| ||||||||| ||||||||||||| || | ||| |||||| ||| || |||||||||||| | ||| ||||||||||||    
T  13843926 agaattttcattaagtggaagaaattacaggacccctttataaatacaagaagaataaaattaccactctattttaaaaataggagaat 13844014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 120 - 175
Target Start/End: Original strand, 30397136 - 30397191
Alignment:
Q  120 ctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcact 175  Q
    |||||||||| ||||||||||||||||  ||| ||||||||||| |||||||||||    
T  30397136 ctaggagaaatctcacaggagaaactatatttcctctctatattgttcctctcact 30397191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 45
Target Start/End: Complemental strand, 825665 - 825632
Alignment:
Q  12 agagaactttcactaagtggaaaaaattacagga 45  Q
    |||||||||||||||||||||| |||||||||||    
T  825665 agagaactttcactaagtggaagaaattacagga 825632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 30397047 - 30397096
Alignment:
Q  19 tttcactaagtggaaaaaattacaggacctctctctaactacaaggagag 68  Q
    ||||||||||||||| |||||||| ||||||| ||||  |||||||||||    
T  30397047 tttcactaagtggaagaaattacaagacctctttctatatacaaggagag 30397096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 299
Target Start/End: Original strand, 31593216 - 31593285
Alignment:
Q  230 aacaatggtacaagagcatgctatttatactggtgaaagagccatgccccaaccaattgcatttatggca 299  Q
    ||||||||| |||||||||| ||||||||   |||||||||||||| | |||| |||| |||| ||||||    
T  31593216 aacaatggtgcaagagcatgttatttatagaagtgaaagagccatgtctcaactaatttcattaatggca 31593285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 830320 - 830288
Alignment:
Q  13 gagaactttcactaagtggaaaaaattacagga 45  Q
    ||||||||||||||||||||| |||||||||||    
T  830320 gagaactttcactaagtggaagaaattacagga 830288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 151; Significance: 1e-79; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 262 - 424
Target Start/End: Original strand, 29585664 - 29585826
Alignment:
Q  262 gtgaaagagccatgccccaaccaattgcatttatggcagcgtgtgaattttcaactttgcatagtaactttccatgtgaacatagaaattacatgccaac 361  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  29585664 gtgaaagagccatgccccaaccaattgcatttatggcagcgtgtgaattttcaactttgcatagtaactttccatgtgaacataaaaactacatgccaac 29585763  T
Q  362 atgttttactgccatgtgataacagttcaacaaaagtggctttaccactttcctgtgttcaca 424  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  29585764 atgttttactgccatgtgataacaattcaacaaaagtggctttaccactttcctgtgttcaca 29585826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 12 - 181
Target Start/End: Original strand, 29585430 - 29585597
Alignment:
Q  12 agagaactttcactaagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacaaacact 111  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |  |||    
T  29585430 agagaactttcactaagtggaagaaattacaggacctctctctaactacaaagagagtacaattaccactctctcttataaataggagaatacta--act 29585527  T
Q  112 aacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactattcta 181  Q
    || || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  29585528 aatacaaactaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactactcta 29585597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 12 - 177
Target Start/End: Complemental strand, 34352435 - 34352272
Alignment:
Q  12 agagaactttcactaagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacaaacact 111  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||    
T  34352435 agagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacta--act 34352338  T
Q  112 aacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactat 177  Q
    ||||| | |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  34352337 aacacaaactaggagaaatctcacaggagaaactaatttttctctctatattttttctctcactat 34352272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 12 - 177
Target Start/End: Complemental strand, 34360143 - 34359980
Alignment:
Q  12 agagaactttcactaagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacaaacact 111  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||    
T  34360143 agagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacta--act 34360046  T
Q  112 aacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactat 177  Q
    ||||| | |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  34360045 aacacaaactaggagaaatctcacaggagaaactaatttttctctctatattttttctctcactat 34359980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 12 - 177
Target Start/End: Complemental strand, 41718597 - 41718434
Alignment:
Q  12 agagaactttcactaagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacaaacact 111  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |  |||    
T  41718597 agagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttataaataggagaatacta--act 41718500  T
Q  112 aacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactat 177  Q
    ||||| | ||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||    
T  41718499 aacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactat 41718434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 12 - 177
Target Start/End: Complemental strand, 41723323 - 41723160
Alignment:
Q  12 agagaactttcactaagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacaaacact 111  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |  |||    
T  41723323 agagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttataaataggagaatacta--act 41723226  T
Q  112 aacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactat 177  Q
    ||||| | ||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||    
T  41723225 aacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactat 41723160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 123; Significance: 7e-63; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 12 - 177
Target Start/End: Original strand, 9439502 - 9439665
Alignment:
Q  12 agagaactttcactaagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacaaacact 111  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |  |||    
T  9439502 agagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttataaataggagaatacta--act 9439599  T
Q  112 aacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactat 177  Q
    ||||| | ||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||    
T  9439600 aacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactat 9439665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 12 - 177
Target Start/End: Original strand, 9444222 - 9444385
Alignment:
Q  12 agagaactttcactaagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacaaacact 111  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |  |||    
T  9444222 agagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttataaataggagaatacta--act 9444319  T
Q  112 aacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactat 177  Q
    ||||| | ||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||    
T  9444320 aacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactat 9444385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 1e-21; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 12 - 175
Target Start/End: Complemental strand, 46191418 - 46191266
Alignment:
Q  12 agagaactttcactaagtggaaaa-aattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacaaacac 110  Q
    |||||||||||||||||||||| | ||||||| ||| ||||||||| || ||||||||   ||||||| |||||||||  |||||||||||||| |||||    
T  46191418 agagaactttcactaagtggaagacaattacaagacttctctctaaatagaaggagagacaaattacc-ctctctcttg-aaataggagaatactaacac 46191321  T
Q  111 taacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcact 175  Q
    ||          ||||||||||||||||||||||||  ||| |||||||||||||||||||||||    
T  46191320 ta----------ggagaaacctcacaggagaaactatatttcctctctatatttttcctctcact 46191266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 12 - 68
Target Start/End: Original strand, 30697244 - 30697300
Alignment:
Q  12 agagaactttcactaagtggaaaaaattacaggacctctctctaactacaaggagag 68  Q
    |||||||||||||||||||||| |||||||| ||||||| ||||| |||||||||||    
T  30697244 agagaactttcactaagtggaagaaattacaagacctctttctaaatacaaggagag 30697300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 12 - 112
Target Start/End: Complemental strand, 4130272 - 4130173
Alignment:
Q  12 agagaactttcactaagtggaa-aaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacaaacac 110  Q
    |||||||||||||||||||||| | ||||||| ||| ||||||||| |||||||||||   ||||||| |||||||||  |||||||| ||||| |||||    
T  4130272 agagaactttcactaagtggaagataattacaagacttctctctaaatacaaggagagacaaattacc-ctctctctt-gaaataggacaatactaacac 4130175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 12 - 175
Target Start/End: Original strand, 27356 - 27508
Alignment:
Q  12 agagaactttcactaagtggaaaa-aattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacaaacac 110  Q
    |||||||||||||||||||||| | |||||||  || ||||||||| |||||||||||   |||||||| ||||||||  ||||||| |||||| |||||    
T  27356 agagaactttcactaagtggaagacaattacaatacttctctctaaatacaaggagagacaaattacca-tctctcttg-aaataggtgaatactaacac 27453  T
Q  111 taacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcact 175  Q
    ||          ||||||||||||||||||||||||  ||| |||||||||||||||||||||||    
T  27454 ta----------ggagaaacctcacaggagaaactatatttcctctctatatttttcctctcact 27508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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