View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3213_low_3 (Length: 407)
Name: NF3213_low_3
Description: NF3213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3213_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 118; Significance: 4e-60; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 180 - 309
Target Start/End: Complemental strand, 7509182 - 7509053
Alignment:
| Q |
180 |
tgaagcaaggtgccaccattctccttaatgcaattcaaaatggggagaggaagaaatttgatttaccaaagcaagagtttgacaaattccacatcagtaa |
279 |
Q |
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| T |
7509182 |
tgaagcaaggtgccaccattctccttaatgcaattcaaaatggggagaggaagaaatttgatttaccaaagcaagaggttgacaaattccaaatcagtaa |
7509083 |
T |
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| Q |
280 |
attgcaaaggaagaagaataggaaaaggaa |
309 |
Q |
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| T |
7509082 |
tttgcaaaggaagaagaataggaaaaggaa |
7509053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 329 - 370
Target Start/End: Complemental strand, 7501196 - 7501155
Alignment:
| Q |
329 |
tcctaagtgttctttctataatgtatcctaaatttattattt |
370 |
Q |
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| T |
7501196 |
tcctaagtgttctttctataatgtgtcctaaatttattattt |
7501155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 180 - 246
Target Start/End: Original strand, 27241492 - 27241558
Alignment:
| Q |
180 |
tgaagcaaggtgccaccattctccttaatgcaattcaaaatggggagaggaagaaatttgatttacc |
246 |
Q |
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| T |
27241492 |
tgaatcaatgtgtcaccattcttcttaatgcaattcaaaatggtgagaggaagaaatttgatttacc |
27241558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 193 - 266
Target Start/End: Original strand, 27249111 - 27249183
Alignment:
| Q |
193 |
caccattctccttaatgcaattcaaaatggggagaggaagaaatttgatttaccaaagcaagagtttgacaaat |
266 |
Q |
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| T |
27249111 |
caccattcttcttaatgcaattcaaaatggcgagaggaagaaattcgattaacccaag-aagagtttgtcaaat |
27249183 |
T |
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