View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3213_low_4 (Length: 329)
Name: NF3213_low_4
Description: NF3213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3213_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 42512187 - 42511880
Alignment:
| Q |
1 |
aaattgaagcacaagctttctcacctggtgatggtgatcctgctgcaggtaactacaacctcaattattacattccttcaaattttctgcaatctacatg |
100 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42512187 |
aaattgaagcacaagctttctcacctggtgat------cctgctgcaggtaactacaacctcaattattacattccttcaaattttctgcaatctacatg |
42512094 |
T |
|
| Q |
101 |
catttatacaagtttataaattaaatattcatgttgaaatattacatgccgtgctttgaaactctgataaacacgtacaccgaacacgacattggcacca |
200 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42512093 |
catttatacaagtttataaataaaatattcatgttgaaatattacatgccgtgctttgaaactctgataaacacgtacaccgaacacgacattggcacca |
42511994 |
T |
|
| Q |
201 |
catgttatcacgccggttgtaatttgagaaaataaattgaatataatcacatatatatgtcggtgtcatgtcggagtcagatatcacacacgccttcgat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
42511993 |
catgttatcacgccggttgtaatttgagaaaataaattgaatataatcac----atatgtcggtgtcatgtcggagtcagatgtcacacacgccttcgat |
42511898 |
T |
|
| Q |
301 |
tataaatgttgaaaatga |
318 |
Q |
| |
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|| ||||||||||||||| |
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| T |
42511897 |
tagaaatgttgaaaatga |
42511880 |
T |
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