View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3213_low_6 (Length: 267)
Name: NF3213_low_6
Description: NF3213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3213_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 257
Target Start/End: Complemental strand, 1727023 - 1726784
Alignment:
| Q |
18 |
cattccatatactcagagtcttagattcctctgccactaaatcatatttcctttgtnnnnnnnnttaagttttatgatttgataagacaacgacatagaa |
117 |
Q |
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| T |
1727023 |
cattccatatactcagagtcttagattcctctgccactaaatcatatttcctttgtaaaaaaaattaaactttttgatttgctaagacaacgacatagaa |
1726924 |
T |
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| Q |
118 |
ttgacaacctcttcgcgagtcagtttagaaaatacttcatcatcatcatcataatctacttcagattctacatcataaattgttgaagccatcaaagtca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
1726923 |
ttgacaacctcttcgcgagtcagtttagaaaatacttcatcatcatcatcatcatctacttcagattctacatcataagttgttgaagccatcaaagtca |
1726824 |
T |
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| Q |
218 |
taatggcttcttcttcattagtttcttcatcaagttcatc |
257 |
Q |
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| T |
1726823 |
tattggcttcttcttcattagtttcttcatcaagttcatc |
1726784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 144 - 239
Target Start/End: Complemental strand, 15668676 - 15668581
Alignment:
| Q |
144 |
agaaaatacttcatcatcatcatcataatctacttcagattctacatcataaattgttgaagccatcaaagtcataatggcttcttcttcattagt |
239 |
Q |
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| T |
15668676 |
agaaaataatttatcatcagaatgaaaatcaacttcagattctacatcagaagtcgttgaagccatcaatgccaaattggcttcttcttcattagt |
15668581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 15668808 - 15668760
Alignment:
| Q |
25 |
tatactcagagtcttagattcctctgccactaaatcatatttcctttgt |
73 |
Q |
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| T |
15668808 |
tatactcagagtcttagattcctttgtcaccaaatcatattgcctttgt |
15668760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 170
Target Start/End: Complemental strand, 11450499 - 11450463
Alignment:
| Q |
134 |
gagtcagtttagaaaatacttcatcatcatcatcata |
170 |
Q |
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||||||||||||| ||||| ||||||||||||||||| |
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| T |
11450499 |
gagtcagtttagagaatacctcatcatcatcatcata |
11450463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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