View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3215-Insertion-1 (Length: 801)
Name: NF3215-Insertion-1
Description: NF3215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3215-Insertion-1 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 668; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 668; E-Value: 0
Query Start/End: Original strand, 8 - 801
Target Start/End: Complemental strand, 23589611 - 23588822
Alignment:
| Q |
8 |
aattttaaaccattttcaaaccttggtaaacctgttctgtttctatacttattttatctaccaatacaaataaacttattacaaacacttatatttccat |
107 |
Q |
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|||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
23589611 |
aattttaaaccattgccaaaccttggt------gttctgtttctatgcttattttatctaccaacacaaataaacttattacaaacacttatatttccat |
23589518 |
T |
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| Q |
108 |
ctctttaaattttattcgcttgcacttggatttgagaagtaaaagcaaactgaagagggtggttattgaattccccttcaaaatctgatccaaacccagg |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||| ||| |
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| T |
23589517 |
ctctttaaattttattcgcttgcacttggatttgagaagtaaaagcaaactgaagagggtggtcattgaattccccttcaaattctgaaccaaaccaagg |
23589418 |
T |
|
| Q |
208 |
gcccacaaaagtcaattgcaccaattatcaactacaaacaaacaccaaaattgaagggttttcctacctgcaaatttcttacctgattaaatttccagca |
307 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
23589417 |
gcccacaaaagtcaattgcaccaattatcaacttcaaacaaacaccaaaattgaagggttttcctacctgcaaatttcttacctgattaaattttcagca |
23589318 |
T |
|
| Q |
308 |
aagagtaaccatttcatcctgataaacacagcaaatgcaacgaagaataacagaatttagtttgagaacaataagcaattaatcaaactaagtaaaatgt |
407 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
23589317 |
aagagtaacc-tttcatcctgataaacacagcaaatgcaacgaagaataacacaatttagtttgagaacaataagcaattaatcaaactaagcaaaatgt |
23589219 |
T |
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| Q |
408 |
agaatagaagcttaaaccatgattaacattaaaagtgaaagaagtacactgatgacataagagttccctacattacctaaatcaaaacaaatacatataa |
507 |
Q |
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| T |
23589218 |
agaatagaagcttaaaccatgattaacattaaaagtgaaagaagtacactgatgacataagagttccctacattacctaaatcaaaacaaatacatataa |
23589119 |
T |
|
| Q |
508 |
ttaagctactaattcaagagtccctgcnnnnnnnntcatgaaccacccatcaatccaatg---acagtttagcttaatcaacttcctcaattttggggcc |
604 |
Q |
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| T |
23589118 |
ttaagctactaattcaagagtccttgcaaaaaaaatcatgaaccacccatcaatcccatgaacaaagtttagcttaatcaacttcctcaattttggggcc |
23589019 |
T |
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| Q |
605 |
agcaccgcttccactgccagctgtaggaccatcctcatccatggctcctccagcatctccaccagcaccttgatacatccttgcaatgatagggttgcaa |
704 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23589018 |
agcaccgcttccactgccagctgtaggaccatcctcatccatggctcctccagcatctccaccagcaccttgatacatccttgcaatgatagggttgcaa |
23588919 |
T |
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| Q |
705 |
atgccctccagctccttcatcttgtcctcaaattcatcagcctctccaagttgatttccatccaaccattgaatagccccctcaatagcatcttcaa |
801 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23588918 |
atgccctccagctccttcatcttgtcctcaaattcatcagcctctccaagttgatttccatccaaccattgaatagccccctcaatagcatcttcaa |
23588822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 576 - 801
Target Start/End: Complemental strand, 23597899 - 23597674
Alignment:
| Q |
576 |
gcttaatcaacttcctcaattttggggccagcaccgcttccactgccagctgtaggaccatcctcatccatggctcctccagcatctccaccagcacctt |
675 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||| | ||| ||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
23597899 |
gcttaatcaacttcctcaattttggggccagcaccacttccactgccagcagcaggtccatcctcatccatggctcctccagcatcaccaccagcacctt |
23597800 |
T |
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| Q |
676 |
gatacatccttgcaatgatagggttgcaaatgccctccagctccttcatcttgtcctcaaattcatcagcctctccaagttgatttccatccaaccattg |
775 |
Q |
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| T |
23597799 |
gatacatccttgcaatgatagggttgcaaataccctccagctccttcatcttgtcctcaaattcatcagcctctccaagttgatttccatccaaccattg |
23597700 |
T |
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| Q |
776 |
aatagccccctcaatagcatcttcaa |
801 |
Q |
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| T |
23597699 |
aatagccccctcaatagcatcttcaa |
23597674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 670 - 754
Target Start/End: Original strand, 39984594 - 39984678
Alignment:
| Q |
670 |
caccttgatacatccttgcaatgatagggttgcaaatgccctccagctccttcatcttgtcctcaaattcatcagcctctccaag |
754 |
Q |
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| T |
39984594 |
caccttggtacatcttggcaatgatagggttgcagacaccttcaagttccttcatcttgtcctcaaactcatcagcctctgcaag |
39984678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 670 - 749
Target Start/End: Complemental strand, 8018633 - 8018554
Alignment:
| Q |
670 |
caccttgatacatccttgcaatgatagggttgcaaatgccctccagctccttcatcttgtcctcaaattcatcagcctct |
749 |
Q |
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|||||||||||||| | |||||||| |||||||||| || ||| || ||||||||||| || ||||| |||||||||||| |
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| T |
8018633 |
caccttgatacatcttggcaatgattgggttgcaaaggctctcaagttccttcatcttatcttcaaactcatcagcctct |
8018554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 670 - 801
Target Start/End: Original strand, 8101615 - 8101746
Alignment:
| Q |
670 |
caccttgatacatccttgcaatgatagggttgcaaatgccctccagctccttcatcttgtcctcaaattcatcagcctctccaagttgatttccatccaa |
769 |
Q |
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||||||| |||||| |||||||||| ||||| || || ||| ||||||||||||||||| ||||| ||||| || || |||| || ||| |||| | |
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| T |
8101615 |
caccttggtacatctttgcaatgattgggttacagattgtctcaagctccttcatcttgtcttcaaactcatcggcttcagcaagctggtttgcatcaag |
8101714 |
T |
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| Q |
770 |
ccattgaatagccccctcaatagcatcttcaa |
801 |
Q |
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| T |
8101715 |
ccattgaatggctccctcaattgcatcctcaa |
8101746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 670 - 760
Target Start/End: Complemental strand, 17706893 - 17706803
Alignment:
| Q |
670 |
caccttgatacatccttgcaatgatagggttgcaaatgccctccagctccttcatcttgtcctcaaattcatcagcctctccaagttgatt |
760 |
Q |
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||||||| |||||| | ||||||||||||||||| | || || | |||||||||||||||||||| ||||| |||||| |||| ||||| |
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| T |
17706893 |
caccttggtacatcttggcaatgatagggttgcagacaccttctggttccttcatcttgtcctcaaactcatctgcctctgcaagctgatt |
17706803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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