View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3215-Insertion-12 (Length: 140)
Name: NF3215-Insertion-12
Description: NF3215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3215-Insertion-12 |
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| [»] chr6 (1 HSPs) |
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| [»] chr4 (6 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 130; Significance: 9e-68; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 130; E-Value: 9e-68
Query Start/End: Original strand, 7 - 140
Target Start/End: Complemental strand, 13609497 - 13609364
Alignment:
| Q |
7 |
actccatgctccctcaagatatggccatctctagaaattacgataattctactccctgaacctagacattctcgtgttatgtccagtttatccagttgtt |
106 |
Q |
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| T |
13609497 |
actccatgctctctcaagatatggccatctctagaaattacgataattctactccctgaacctagacattctcgtgttatgtccagtttatccagttgtt |
13609398 |
T |
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| Q |
107 |
caactttatcaacattatcaagaactacaaggga |
140 |
Q |
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| T |
13609397 |
caactttatcaacattatcaagaactacaaggga |
13609364 |
T |
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Target: chr4 (Bit Score: 78; Significance: 1e-36; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 1e-36
Query Start/End: Original strand, 7 - 140
Target Start/End: Complemental strand, 31245446 - 31245313
Alignment:
| Q |
7 |
actccatgctccctcaagatatggccatctctagaaattacgataattctactccctgaacctagacattctcgtgttatgtccagtttatccagttgtt |
106 |
Q |
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| T |
31245446 |
actccatgctctctcaagatatgaacatctctagaaattatgatgattctactccctgtgcctagccattctcgtgtcatagccaatttatccagttgtt |
31245347 |
T |
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| Q |
107 |
caactttatcaacattatcaagaactacaaggga |
140 |
Q |
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| T |
31245346 |
caacttgatcaacattatcaagaactataaggga |
31245313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 7 - 127
Target Start/End: Original strand, 31158956 - 31159076
Alignment:
| Q |
7 |
actccatgctccctcaagatatggccatctctagaaattacgataattctactccctgaacctagacattctcgtgttatgtccagtttatccagttgtt |
106 |
Q |
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| T |
31158956 |
actccatactctttcaagatatgttcatctctagaaattataacgattctactccctgcacctaagcattcacgattcacagctaatttatcaagttgtt |
31159055 |
T |
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| Q |
107 |
caactttatcaacattatcaa |
127 |
Q |
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| T |
31159056 |
caactttatcaacattatcaa |
31159076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 7 - 130
Target Start/End: Original strand, 31029388 - 31029511
Alignment:
| Q |
7 |
actccatgctccctcaagatatggccatctctagaaattacgataattctactccctgaacctagacattctcgtgttatgtccagtttatccagttgtt |
106 |
Q |
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| T |
31029388 |
actccatactcattcaagatatgctcatctctagaaattataatgattctactccctgcacctaaatattcacgatttaaagctaacttatcgagctgtt |
31029487 |
T |
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| Q |
107 |
caactttatcaacattatcaagaa |
130 |
Q |
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| T |
31029488 |
caactttatcaacattatcgagaa |
31029511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 97 - 127
Target Start/End: Complemental strand, 31477248 - 31477218
Alignment:
| Q |
97 |
tccagttgttcaactttatcaacattatcaa |
127 |
Q |
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| T |
31477248 |
tccagttgttcaactttatcaacattatcaa |
31477218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 97 - 127
Target Start/End: Complemental strand, 31502370 - 31502340
Alignment:
| Q |
97 |
tccagttgttcaactttatcaacattatcaa |
127 |
Q |
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| T |
31502370 |
tccagttgttcaactttatcaacattatcaa |
31502340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 139
Target Start/End: Original strand, 31033784 - 31033820
Alignment:
| Q |
103 |
tgttcaactttatcaacattatcaagaactacaaggg |
139 |
Q |
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| T |
31033784 |
tgttcaacttgatcaacattatcaagaactagaaggg |
31033820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 7 - 137
Target Start/End: Complemental strand, 14724722 - 14724595
Alignment:
| Q |
7 |
actccatgctccctcaagatatggccatctctagaaattacgataattctactccctgaacctagacattctcgtgttatgtccagtttatccagttgtt |
106 |
Q |
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| T |
14724722 |
actccatgctctctgaagatatggctatctctagatattacgatgattctacttcctgtgcctagccattatcatttcatggccaatttttcaagttgtt |
14724623 |
T |
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| Q |
107 |
caactttatcaacattatcaagaactacaag |
137 |
Q |
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| T |
14724622 |
caact---tgaacattatcaagaacttcaag |
14724595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 83 - 138
Target Start/End: Complemental strand, 25638696 - 25638641
Alignment:
| Q |
83 |
ttatgtccagtttatccagttgttcaactttatcaacattatcaagaactacaagg |
138 |
Q |
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| T |
25638696 |
ttatatccaattcatccagttgctcaatttgatcaacattgtcaagaactacaagg |
25638641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 7 - 131
Target Start/End: Original strand, 17599040 - 17599168
Alignment:
| Q |
7 |
actccatgctccctcaagatatggccatctctagaaattacgataattctactccctgaacct----agacattctcgtgttatgtccagtttatccagt |
102 |
Q |
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| T |
17599040 |
actccatgctctctgaagatatggctatctctagatattacgatgattctacttcttgtgcctagccagccattctcatttcatggccaatttttccagt |
17599139 |
T |
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| Q |
103 |
tgttcaactttatcaacattatcaagaac |
131 |
Q |
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| T |
17599140 |
tgttcaacttgatgaacattatcaagaac |
17599168 |
T |
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