View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3215-Insertion-3 (Length: 475)

Name: NF3215-Insertion-3
Description: NF3215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3215-Insertion-3
NF3215-Insertion-3
[»] chr8 (5 HSPs)
chr8 (8-471)||(30141809-30142273)
chr8 (32-142)||(15195982-15196106)
chr8 (390-455)||(19452614-19452679)
chr8 (390-455)||(19528397-19528462)
chr8 (390-455)||(13217951-13218016)
[»] chr7 (3 HSPs)
chr7 (390-455)||(2476747-2476812)
chr7 (390-455)||(26572776-26572841)
chr7 (390-474)||(8876451-8876535)
[»] chr4 (3 HSPs)
chr4 (390-455)||(10179321-10179385)
chr4 (390-446)||(30500460-30500516)
chr4 (390-455)||(50688515-50688580)
[»] chr1 (2 HSPs)
chr1 (390-455)||(1972148-1972213)
chr1 (390-444)||(26099920-26099974)
[»] chr2 (1 HSPs)
chr2 (390-472)||(17558392-17558474)
[»] chr6 (1 HSPs)
chr6 (315-353)||(20712075-20712112)
[»] chr5 (2 HSPs)
chr5 (315-353)||(26627338-26627376)
chr5 (315-351)||(25028386-25028422)
[»] chr3 (1 HSPs)
chr3 (314-347)||(49886806-49886839)


Alignment Details
Target: chr8 (Bit Score: 404; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 8 - 471
Target Start/End: Original strand, 30141809 - 30142273
Alignment:
Q  8 caaagcaatactcctgattcattgcatctctaaaacacctttaccaagcccaccttcttctaatagctccttgactttcatgtatcatagcatttccaaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30141809 caaagcaatactcctgattcattgcatctctaaaacacctttaccaagcccaccttcttctaatagctccttgactttcatgtatcatagcatttccaaa 30141908  T
Q  108 ataatcatatggtagtggtgaaaccaaccttgatccaatcagaattcaaccccaatgcccacattttttaaaaataaattaatcttaccagcttctattt 207  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30141909 ataatcatatggtggtggtgaaaccaaccttgatccaatcagaattcaaccccaatgcccacattttttaaaaataaattaatcttaccagcttctattt 30142008  T
Q  208 tattttataacattagttctaacaataaagatttcttgnnnnnnnagtaaattaagatctctagttgacactacaagttctccatcaagaatataaaaag 307  Q
    ||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||    
T  30142009 tattttataacattagttctaacaataaagatttcttgtttttttagtaaattaagatctctagttgacactgcaagttctccatcaaaaatataaaaag 30142108  T
Q  308 aattgatatatttgtac-aactatttttaagcaacttttagacaactctcttcttctttattttaacattacataaaatatatgatgagcatgagtgcta 406  Q
    ||||||||||||| ||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  30142109 aattgatatatttatactaactatttttaaacaacttttagacaattctcttcttctttattttaacattacataaaatatatgatgagcatgggtgcta 30142208  T
Q  407 gttcctcgtgaattagagttaggactactttgctgatgcttcaagctcatccattttcttgttgg 471  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  30142209 gttcctcgtgaattagagttagaactactttgctgatgcttcaagctcatccattttcttgttgg 30142273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 32 - 142
Target Start/End: Complemental strand, 15196106 - 15195982
Alignment:
Q  32 catctctaaaacacctttaccaagcccaccttcttctaatagctccttgactttcatg--------------tatcatagcatttccaaaataatcatat 117  Q
    ||||||||||  ||||||||||||||| |||||||||||||||||| ||||||||||               ||||||||||||||||||||||||||||    
T  15196106 catctctaaagaacctttaccaagcccgccttcttctaatagctccctgactttcattgtaaccccacaaactatcatagcatttccaaaataatcatat 15196007  T
Q  118 ggtagtggtgaaaccaaccttgatc 142  Q
    | |||||||| ||||||||||||||    
T  15196006 gatagtggtggaaccaaccttgatc 15195982  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 390 - 455
Target Start/End: Complemental strand, 19452679 - 19452614
Alignment:
Q  390 gatgagcatgagtgctagttcctcgtgaattagagttaggactactttgctgatgcttcaagctca 455  Q
    ||||||||||||||| ||||| | |||| |||||||||||| |||||   ||||||||||||||||    
T  19452679 gatgagcatgagtgcgagttcttagtgatttagagttaggattacttgagtgatgcttcaagctca 19452614  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 390 - 455
Target Start/End: Original strand, 19528397 - 19528462
Alignment:
Q  390 gatgagcatgagtgctagttcctcgtgaattagagttaggactactttgctgatgcttcaagctca 455  Q
    ||||||||||||||| ||||| | |||| |||||||||||| |||||   ||||||||||||||||    
T  19528397 gatgagcatgagtgcgagttcttagtgatttagagttaggattacttgagtgatgcttcaagctca 19528462  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 455
Target Start/End: Complemental strand, 13218016 - 13217951
Alignment:
Q  390 gatgagcatgagtgctagttcctcgtgaattagagttaggactactttgctgatgcttcaagctca 455  Q
    |||||||||| ||||||| |||| |||| |||||||||||| |||||   ||||||||||| ||||    
T  13218016 gatgagcatgtgtgctagctcctagtgatttagagttaggattacttaagtgatgcttcaatctca 13217951  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 390 - 455
Target Start/End: Complemental strand, 2476812 - 2476747
Alignment:
Q  390 gatgagcatgagtgctagttcctcgtgaattagagttaggactactttgctgatgcttcaagctca 455  Q
    ||||||||||||||||||||| | |||| ||||||| |||| ||||| | ||||||||||||||||    
T  2476812 gatgagcatgagtgctagttcttagtgatttagagtcaggattacttgggtgatgcttcaagctca 2476747  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 455
Target Start/End: Complemental strand, 26572841 - 26572776
Alignment:
Q  390 gatgagcatgagtgctagttcctcgtgaattagagttaggactactttgctgatgcttcaagctca 455  Q
    |||||||||||||| |||||| | |||| ||||||||| || || || | ||||||||||||||||    
T  26572841 gatgagcatgagtgttagttcttagtgatttagagttaagattatttgggtgatgcttcaagctca 26572776  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 390 - 474
Target Start/End: Original strand, 8876451 - 8876535
Alignment:
Q  390 gatgagcatgagtgctagttcctcgtgaattagagttaggactactttgctgatgcttcaagctcatccattttcttgttggagt 474  Q
    ||||||||||||||||||||| | || | |||| ||||  | ||||| | |||||||| ||||||| | |||| |||||||||||    
T  8876451 gatgagcatgagtgctagttcttagtaatttagggttataattacttaggtgatgctttaagctcacctatttccttgttggagt 8876535  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 390 - 455
Target Start/End: Original strand, 10179321 - 10179385
Alignment:
Q  390 gatgagcatgagtgctagttcctcgtgaattagagttaggactactttgctgatgcttcaagctca 455  Q
    ||||||||||||||||||||| | ||||||||||||||||| ||| ||| ||||||||| ||||||    
T  10179321 gatgagcatgagtgctagttcttagtgaattagagttaggattac-ttgatgatgcttctagctca 10179385  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 390 - 446
Target Start/End: Original strand, 30500460 - 30500516
Alignment:
Q  390 gatgagcatgagtgctagttcctcgtgaattagagttaggactactttgctgatgct 446  Q
    ||||||||||||||||||||| | |||||||||| |||||| ||||||| |||||||    
T  30500460 gatgagcatgagtgctagttcttagtgaattagatttaggattactttggtgatgct 30500516  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 390 - 455
Target Start/End: Original strand, 50688515 - 50688580
Alignment:
Q  390 gatgagcatgagtgctagttcctcgtgaattagagttaggactactttgctgatgcttcaagctca 455  Q
    |||||||||||||||| |||| | |||| ||||||||| || ||||||| |||| |||||||||||    
T  50688515 gatgagcatgagtgctcgttcttagtgatttagagttatgattactttggtgatacttcaagctca 50688580  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 390 - 455
Target Start/End: Original strand, 1972148 - 1972213
Alignment:
Q  390 gatgagcatgagtgctagttcctcgtgaattagagttaggactactttgctgatgcttcaagctca 455  Q
    ||||||||||||||||||||| | |  || ||||||||||| ||||||| ||||||||||||||||    
T  1972148 gatgagcatgagtgctagttcttagataactagagttaggattactttggtgatgcttcaagctca 1972213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 390 - 444
Target Start/End: Original strand, 26099920 - 26099974
Alignment:
Q  390 gatgagcatgagtgctagttcctcgtgaattagagttaggactactttgctgatg 444  Q
    ||||||||||||||||||||| | ||||||||||||||  | ||||||| |||||    
T  26099920 gatgagcatgagtgctagttcttagtgaattagagttataattactttggtgatg 26099974  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 390 - 472
Target Start/End: Complemental strand, 17558474 - 17558392
Alignment:
Q  390 gatgagcatgagtgctagttcctcgtgaattagagttaggactactttgctgatgcttcaagctcatccattttcttgttgga 472  Q
    ||||||||||||||||||||| | |||| ||  |||||||| ||||| | ||||||||||| |||| |  |||||||||||||    
T  17558474 gatgagcatgagtgctagttcttagtgattttaagttaggattacttaggtgatgcttcaaactcacctcttttcttgttgga 17558392  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 353
Target Start/End: Original strand, 20712075 - 20712112
Alignment:
Q  315 atatttgtacaactatttttaagcaacttttagacaact 353  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  20712075 atatttgtacaactatttttaa-caacttttagacaact 20712112  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 353
Target Start/End: Original strand, 26627338 - 26627376
Alignment:
Q  315 atatttgtacaactatttttaagcaacttttagacaact 353  Q
    |||||||||||||||||||| | ||||||||||||||||    
T  26627338 atatttgtacaactattttttatcaacttttagacaact 26627376  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 315 - 351
Target Start/End: Complemental strand, 25028422 - 25028386
Alignment:
Q  315 atatttgtacaactatttttaagcaacttttagacaa 351  Q
    ||||||||||||||||||| || ||||||||||||||    
T  25028422 atatttgtacaactattttaaaacaacttttagacaa 25028386  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 347
Target Start/End: Complemental strand, 49886839 - 49886806
Alignment:
Q  314 tatatttgtacaactatttttaagcaacttttag 347  Q
    ||||||||||||||||||||||| ||||||||||    
T  49886839 tatatttgtacaactatttttaaacaacttttag 49886806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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