View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3215-Insertion-4 (Length: 494)
Name: NF3215-Insertion-4
Description: NF3215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3215-Insertion-4 |
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| [»] chr7 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 8 - 494
Target Start/End: Original strand, 45675632 - 45676104
Alignment:
| Q |
8 |
ggaatagaatttggatttggtgtatcatcaaatagattcttcacttcattggatcccacagaggttttttgaatctgaatatttggtgtgtcattgtcat |
107 |
Q |
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| T |
45675632 |
ggaatagaatttggatttggtgtatcatcaaatagattcttcacttcattggatcccacagaggttttttgaatctgaatatttggtgtgtcattgtcat |
45675731 |
T |
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| Q |
108 |
tgttctcagagaatggttggtgtgtgtttggatcaattcctttttgctttagcttcttcttcagacttgaattccatagattttttatttcattgtctgt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
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| T |
45675732 |
tgttctcagagaatggttggtgtgtgtttggatcaattcctttttgctttagcttctttttcagacttgaattccatagattttttatctcattgtctgt |
45675831 |
T |
|
| Q |
208 |
tcttccaggtaactgagctgcaatctgcgaccacctgataattcaaaaggcaccaaagtatattagtcattgtcgcttcgattcgtagaaagnnnnnnnn |
307 |
Q |
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| T |
45675832 |
tcttccaggtaactgagctgcaatctgcgaccacctgataattcaaaaggcaccaaagtatattagtcattgtcgcttcgattcgtagaaagaaaa---- |
45675927 |
T |
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| Q |
308 |
nnnnnngcatgtaacaaaataatcttgatgacttaattaaaagccaaatctaaatgcaacacttatcagttccttaattattacaattattggtacctgt |
407 |
Q |
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| T |
45675928 |
--------aaata--aaaataatcttgatgacttaattaaaagccaaatctaaatgcaacacttatcaattccttaattattacaattattggtacctgt |
45676017 |
T |
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| Q |
408 |
tgcctaggagtgcatgaagttcaattatggaattctcttcttgctctgagaatgctcctctcttcaaatcaggccttagataattta |
494 |
Q |
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| T |
45676018 |
tgcctaggagtgcatgaagttcaattatggaattctcttcttgctctgagaatgctcctctcttcaaatcaggccttagataattta |
45676104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 112 - 247
Target Start/End: Complemental strand, 37963188 - 37963053
Alignment:
| Q |
112 |
ctcagagaatggttggtgtgtgtttggatcaattcctttttgctttagcttcttcttcagacttgaattccatagattttttatttcattgtctgttctt |
211 |
Q |
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|||||||| ||||| |||||||||||||||||| || |||| | | | ||||||| |||| |||||||||||||||||| || |||||||| |||||| |
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| T |
37963188 |
ctcagagagtggtttgtgtgtgtttggatcaatgccactttgtctcaacctcttcttgagacatgaattccatagatttttaatctcattgtcagttctt |
37963089 |
T |
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| Q |
212 |
ccaggtaactgagctgcaatctgcgaccacctgata |
247 |
Q |
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| T |
37963088 |
cctggtaattgtgctgcaatctgagaccatctgata |
37963053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 419 - 483
Target Start/End: Complemental strand, 37962974 - 37962910
Alignment:
| Q |
419 |
gcatgaagttcaattatggaattctcttcttgctctgagaatgctcctctcttcaaatcaggcct |
483 |
Q |
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| T |
37962974 |
gcatgaagttcaatgatcaaattctcttcttgttgtgagaatgctcctcttttcaaatcaggcct |
37962910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 181 - 219
Target Start/End: Original strand, 16138163 - 16138201
Alignment:
| Q |
181 |
ccatagattttttatttcattgtctgttcttccaggtaa |
219 |
Q |
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| T |
16138163 |
ccatacattttttatttcattgtctgttcttccaggtaa |
16138201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 136 - 245
Target Start/End: Complemental strand, 51044772 - 51044663
Alignment:
| Q |
136 |
tggatcaattcctttttgctttagcttcttcttcagacttgaattccatagattttttatttcattgtctgttcttccaggtaactgagctgcaatctgc |
235 |
Q |
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| T |
51044772 |
tggatcaatcccttgtttcattagtttcttcttcaaacttgaattccaaaagttttttatctcattatctgttctccctggtaattgtgatgcaatttga |
51044673 |
T |
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| Q |
236 |
gaccacctga |
245 |
Q |
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| T |
51044672 |
gcccacctga |
51044663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 187 - 219
Target Start/End: Original strand, 16127079 - 16127111
Alignment:
| Q |
187 |
attttttatttcattgtctgttcttccaggtaa |
219 |
Q |
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| T |
16127079 |
attttttatttcattgtctgttcttccaggtaa |
16127111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 401 - 494
Target Start/End: Complemental strand, 5690758 - 5690665
Alignment:
| Q |
401 |
tacctgttgcctaggagtgcatgaagttcaattatggaattctcttcttgctctgagaatgctcctctcttcaaatcaggccttagataattta |
494 |
Q |
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| T |
5690758 |
tacctgttgccaagtactgcatgaagttcaatgatcaaattctcttcttattgtgagaatgctcctcttttcaaatcaggcgttaagtaattta |
5690665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 188 - 231
Target Start/End: Complemental strand, 53557754 - 53557711
Alignment:
| Q |
188 |
ttttttatttcattgtctgttcttccaggtaactgagctgcaat |
231 |
Q |
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| T |
53557754 |
ttttttatgtcattgtctgttcttccaggtaactgagcagcaat |
53557711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 222
Target Start/End: Original strand, 20740369 - 20740400
Alignment:
| Q |
191 |
tttatttcattgtctgttcttccaggtaactg |
222 |
Q |
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| T |
20740369 |
tttatttcattgtctgttcttccaggtaactg |
20740400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 221
Target Start/End: Original strand, 20732633 - 20732663
Alignment:
| Q |
191 |
tttatttcattgtctgttcttccaggtaact |
221 |
Q |
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| T |
20732633 |
tttatttcattgtctgttcttccaggtaact |
20732663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 245
Target Start/End: Original strand, 34626408 - 34626517
Alignment:
| Q |
136 |
tggatcaattcctttttgctttagcttcttcttcagacttgaattccatagattttttatttcattgtctgttcttccaggtaactgagctgcaatctgc |
235 |
Q |
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| T |
34626408 |
tggatcaatcccttgtttcattagtttcttcttcaaacttgaattccaaaagtttttaatctcattatccgttctacctggtaattgtgctgcaatttga |
34626507 |
T |
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| Q |
236 |
gaccacctga |
245 |
Q |
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| T |
34626508 |
gcccacctga |
34626517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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